# Unimod (Mascot 2.2) - former duplicates in the other & old section. 
Pyro-carbamidomethyl (N-term C)=Pyr
Gln->pyro-Glu (N-term Q)=Pyr
Glu->pyro-glu (N-term E)=Pyr
Glu->pyro-Glu (N-term E)=Pyr
Acetyl (K)=Ace
Acetyl (ST)=Ace
Acetyl (N-term)=Ace
Acetyl (Protein N-term)=Ace
Acetyl:2H(3)C13(2) (N-term)=AcD3C13
Acetyl:2H(3)C13(2) (K)=AcD3C13
Acetyl:2H(3) (K)=AcD3K
Acetyl:2H(3) (N-term)=AcD3
Acetyl:2H(3) (S)=AcD3
Acetyl:2H(3) (T)=AcD3
Acetyl:2H(3) (Y)=AcD3
Formyl (Protein N-term)=For
N-Formyl (Protein)=For
N-Acetyl (Protein)=AcPr
Oxidation (M)=Mox
Oxidation (WH)=ox
Dioxidation (W)=2ox
Trp->Kynurenin (W)=Kyn
Trp->Hydroxykynurenin (W)=HKyn
Deamidated (NQ)=Dam
TNB (N-term)=TNB
Thioacyl (N-term)=Tac
Thioacyl (K)=Tac
Amidated (C-term)=Ami

# Labels
Label:13C(6) (K)=c13
Label:13C(6) (R)=C13
Label:18O(1) (C-term)=C180i
Label:18O(2) (C-term)=C18O
Label:12C(6)D(3) (R)=C12D3
Label:13C(6)15N(4)D(3) (R)=C13N15D3
Acetyl:C13(2) (N-term)=Ace2C13
O18Ser (S)=S18O
O18Thr (T)=T18O
Lys-SBO18 (K)=KsbH
Tyr-SBO18 (Y)=YsbH
Label:13C(5) (P)=C13
Pro 5xC(13)1xN(15) (P)=C13N15
Label:13C(6)15N(4) (R)=C13N15
Label:13C(5)15NMox (M)=C13N15ox
Label:13C(5)N15(1) (M)=C13N15
Arg 13C6-15N4 (R)=C13N15
NMA (R)=NMA
NMAC13 (R)=NMA
NMAC13N15 (R)=NMA
Propionyl (N-term)=prop
Propionyl (K)=prop
Propionyl:13C(3) (N-term)=propC13
Propionyl:13C(3) (K)=propC13
MetSulfon (M)=sulfon
Label:13C(5)15NSulfon (M)=C13N15Sn
Butyl (N-term)=But
Butyl (N-term)=But
Butyl (K)=But
Butinyl (S)=But
Butinyl (T)=But
Butyl:13C(2) (K)=But2C13
Butyl:13C(2) (N-term)=But2C13
Butyl:13C(4) (K)=But4C13
Butyl:13C(4) (N-term)=But4C13
Nethylmaleimide (C)=NEM
Label:K13C(6)AcD3 (K)=AcD3C13
TMPP (N-term)=TMPP
TMPP (K)=TMPP
TMPP-add (N-term)=TMPP2
GLy (N-term)=Gly
GLy (K)=Gly
N15 (ADEFGILPSTVY)=N15
N15(2) (KNQW)=N15
N15(3) (H)=N15
N15(4) (R)=N15


# Other & Old.
Arg 6xC(13) (R)=C13
Pro 5xC(13) (P)=C13
Carbamidomethyl (C)=Cmm
Carbamidomethyl N15 (C)=Cmm15
Carbamidomethyloxide (C)=CmmOx
Carbamidomethylsulfon (C) =CmmS
Pyr,Carbamidomethyloxide (C)=PyrCmmOx
Myristoylation (term)=Myr
Amide (C-term)=Ami
Acetyl_heavy (N-term)=AcD3
Acetyl_heavy (K)=AcD3K
Methyl ester (DE)=Met
Methyl ester (C-term)=Met
Phospho (STY)=P
Phospho (ST)=P
Phospho (Y)=P
Sulphone (M)=Sul
Pyro-cmC (N-term camC)=Pyc
Pyro-glu (N-term Q)=Pyr
Pyro-glu (N-term E)=Pyr
Deamidation (NQ)=Dam
HSe=Hse
Propionamide (C)=Prp
Carbamyl (N-term)=Car
cyclic carbamate (N-term S)=Ccar
cyclic carbamate (N-term T)=Ccar
thioprop (N-term)=Tpr
thiopropcar (N-term)=Tpc
ThiopropLys (K)=Tpl
ThiopropCarbLys (K)=Tcl
Homoarg (K)=Har
Biotin-S-S-Lysin (K)=BSL
Oxidation - 32 (W)=Wox
Oxidation - 48 (W)=Wo2
Tyrosinamine (Y)=Yam
Tyrosineaminesulfon (Y) =YAS
Tyrosinsulfon (Y) = YS
N-Formyl (Protein) = For
Nitro (Y) = NO
Cysteic_acid (C)=CyA
Cysteic acid (C)=CyA
4H_reagent (K)=4H
Carbamyl (K)=Cak
Phospho-NL (S)=Pnl
Phospho-NL (T)=Pnl
NL_h2o_phospho (ST)=Pnl
hydroxykynurenin (W)=Hkn
kynurenin (W)=Kyn
Oxidation (HW)=Ox
Gly-Gly epsilonNH2(K) = GGe
Methyl (N-term)=Met
Tyrosinamine1 (Y)=Yam1
Lys-DSP (K)=Dsp
GlyGly (K) = GGe
GlyGlyArg (K) = GGR
Biotin-PEO3-squarate (N-term) = BioPEO3
Formyl (N-term) = For
BS3-X-link (K)=BS3
BS3-X-link (N-term)=BS3
BS3-X-link (Protein N-term)=BS3
Label:-13C(2)D(3) (R)=C2D3
Label:13C(4)15N(4)2H(-3) (R)=C4N4Hmin3
Label:13C(6)15N(4)13C(2)D(3) (R)=C6N4C2D3
Label:13C(2)D(3) (R)=C2D3
Oxidation N15 (M)=Mox15
N15 methionine (M)=N15
O-GlcNAc (ST)=OGlcNac

# Bart GH
6Da/0Da loss 5xC13 1xN15 (M) =Mloss
6Da/0Da gain (M) =Mgain
TyrosinamineAcet (Y) =Yamac
Amino (Y) = Yam
Acetyltyrosinamine (Y) = Yamacet
Acetyltyrosinamine (W) = Wamacet
Tyrosinaminesulfon (Y) = Yamsul
6Da/0Da loss 5xC13 1xN15 (Mox) =Moxloss
6Da/0Da gain (Mox) =Moxgain
MoxC13 (Mox) = MoxC13
Amino (Y) = Yam
Methyl (K) = Met
Trimethyl (K) = Trimet
Dimethylation (K) = Dimet
Methyl (H) = Met

# Evy T
NBS (W)=NBS
Hydroxyl (P)=Hyp

# FSBG
FSBG Full (CKSY) = FSBG
FSBG mod (CKSY) = FSB

# Biotin
Biotin-PEO3-squarate (N-term) = biotin
Biotin-PEO3-squarate (CKSTY) = biotin

# Cytomics
Cyt121598 -boc -208 (C) = Cyt


# FSBA mods.
Tyr-SBA (Y)=Ysba
Lys-SBA (K)=Ksba
His-SBA (H)=Hsba
Cys-SBA (C)=Csba
Ser-SBA (S)=Ssba
His-SB (H)=Hsb
Cys-SB (C)=Csb
Ser-SB (S)=Ssb
Lys-SB (K)=Ksb
Tyr-SB (Y)=Ysb


Copy of Oxidation (M)=Mox
Copy of Label:13C(6) (K)=c13
Copy of Label:13C(6) (R)=C13


# Carbonylation modifications:
# Lysine can be converted in Aminoadipic-semialdehyde
# Arginine and Proline can be converted in Glutamic-semialdehyde
# Hydrazone formed between Aminoadipic-semialdehyde and 6-Hydrazinonicotinic-Acid-Y(NO2)R
Lys-CO1 (K)=CO1
# Hydrazone formed between Glutamic-semialdehyde and 6-Hydrazinonicotinic-Acid-Y(NO2)R
RP-CO1 (RP)=CO1
# Hydrazone formed between 2-amino-3-ketobutyric-Acid and 6-Hydrazinonicotinic-Acid-Y(NO2)R
threo-CO1 (T)=CO1
# Hydrazone formed between Lysine-4-keto-Benaldehyde and 6-Hydrazinonicotinic-Acid-Y(NO2)R (for in vitro tests)
Lys-BCO1 (K)=BCO1
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#added 21012015
TMT6plex (N-term)=TMT6plex