<xml>
	<enzyme>
		<id> 0 </id>
		<name> Trypsin </name>
		<aminoAcidBefore> RK </aminoAcidBefore>
		<restrictionBefore>  </restrictionBefore>
		<aminoAcidAfter>  </aminoAcidAfter>
		<restrictionAfter> P </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 1 </id>
		<name> Arg-C </name>
		<aminoAcidBefore> R </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> P </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 2 </id>
		<name> CNBr </name>
		<aminoAcidBefore> M </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 3 </id>
		<name> Chymotrypsin (FYWL) </name>
		<aminoAcidBefore> FYWL </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> P </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 4 </id>
		<name> Formic Acid </name>
		<aminoAcidBefore> D </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 5 </id>
		<name> Lys-C </name>
		<aminoAcidBefore> K </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> P </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 6 </id>
		<name> Lys-C, no P rule </name>
		<aminoAcidBefore> K </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 7 </id>
		<name> Pepsin A </name>
		<aminoAcidBefore> FL </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 8 </id>
		<name> Trypsin + CNBr </name>
		<aminoAcidBefore> RKM </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> P </restrictionAfter> <!-- should ideally be only after RK, not after M -->
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 9 </id>
		<name> Trypsin + Chymotrypsin (FYWLKR) </name>
		<aminoAcidBefore> FYWLKR </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> P </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 10 </id>
		<name> Trypsin, no P rule </name>
		<aminoAcidBefore> RK </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 11 </id>
		<name> Whole Protein </name> 
		<aminoAcidBefore> </aminoAcidBefore>
		<restrictionBefore> X </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> X </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> yes </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 12 </id>
		<name> Asp-N </name>
		<aminoAcidBefore> </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> D </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 13 </id>
		<name> Glu-C </name>
		<aminoAcidBefore> E </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 14 </id>
		<name> Asp-N + Glu-C </name>
		<aminoAcidBefore> E </aminoAcidBefore> <!-- both c- and n-terminal!! --> 
		<restrictionBefore> </restrictionBefore> <!-- Multiple rules may be specified by separated with commas -->
		<aminoAcidAfter> D </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 15 </id>
		<name> Top-Down </name>
		<aminoAcidBefore> </aminoAcidBefore>
		<restrictionBefore> X </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> X </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> yes </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 16 </id>
		<name> Semi-Tryptic </name>
		<aminoAcidBefore> RK </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> P </restrictionAfter>
		<semiSpecific> yes </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 17 </id>
		<name> Unspecific </name> <!-- note: cleaves at every residue! -->
		<aminoAcidBefore> X </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> X </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> yes </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 18 </id>
		<name> Chymotrypsin, no P rule (FYWL) </name>
		<aminoAcidBefore> FYWL </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 19 </id>
		<name> Asp-N (DE) </name>
		<aminoAcidBefore> </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> DE </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 20 </id>
		<name> Glu-C (DE) </name>
		<aminoAcidBefore> DE </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> P </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 21 </id>
		<name> Lys-N (K) </name>
		<aminoAcidBefore> </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> K </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 22 </id>
		<name> Thermolysin, no P rule </name>
		<aminoAcidBefore> </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> AFILMV </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 23 </id>
		<name> Semi-Chymotrypsin (FYWL) </name>
		<aminoAcidBefore> FYWL </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> P </restrictionAfter>
		<semiSpecific> yes </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 24 </id>
		<name> Semi-Glu-C </name>
		<aminoAcidBefore> E </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> P </restrictionAfter>
		<semiSpecific> yes </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 25 </id>
		<name> LysargiNase </name>
		<aminoAcidBefore>  </aminoAcidBefore>
		<restrictionBefore>  </restrictionBefore>
		<aminoAcidAfter> RK </aminoAcidAfter>
		<restrictionAfter>  </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 26 </id>
		<name> Semi-LysargiNase </name>
		<aminoAcidBefore>  </aminoAcidBefore>
		<restrictionBefore>  </restrictionBefore>
		<aminoAcidAfter> RK </aminoAcidAfter>
		<restrictionAfter>  </restrictionAfter>
		<semiSpecific> yes </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 27 </id>
		<name> Trypsin + Glu-C </name>
		<aminoAcidBefore> RKE </aminoAcidBefore>
		<restrictionBefore>  </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter>  </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 28 </id>
		<name> Semi-Arg-C </name>
		<aminoAcidBefore> R </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> P </restrictionAfter>
		<semiSpecific> yes </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 29 </id>
		<name> Semi-Glu-C (DE) </name>
		<aminoAcidBefore> DE </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> </aminoAcidAfter>
		<restrictionAfter> P </restrictionAfter>
		<semiSpecific> yes </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 30 </id>
		<name> Arg-N </name>
		<aminoAcidBefore> </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> R </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> no </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
	<enzyme>
		<id> 31 </id>
		<name> Semi-Arg-N </name>
		<aminoAcidBefore> </aminoAcidBefore>
		<restrictionBefore> </restrictionBefore>
		<aminoAcidAfter> R </aminoAcidAfter>
		<restrictionAfter> </restrictionAfter>
		<semiSpecific> yes </semiSpecific>
		<wholeProtein> no </wholeProtein>
	</enzyme>
</xml>