Package eu.isas.peptideshaker.cmd

Class PathSettingsCLIInputBean

java.lang.Object

eu.isas.peptideshaker.cmd.PathSettingsCLIInputBean

public class PathSettingsCLIInputBean
extends Object

Parses the command line and retrieves the user input.

Author:

Marc Vaudel

Constructor Summary

Constructors

Constructor	Description
PathSettingsCLIInputBean(org.apache.commons.cli.CommandLine aLine)	Construct a FollowUpCLIInputBean from an Apache CLI instance.

Method Summary

Modifier and Type	Method	Description
File	getLogFolder()	Returns the folder where to save the log files.
HashMap<String,String>	getPaths()	Returns the specific paths provided by the user in a map: Path id > path.
String	getTempFolder()	Returns the temp folder, an empty string if not set.
boolean	hasInput()	Indicates whether the user gave some path configuration input.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

PathSettingsCLIInputBean

public PathSettingsCLIInputBean(org.apache.commons.cli.CommandLine aLine)

Construct a FollowUpCLIInputBean from an Apache CLI instance.

Parameters:

aLine - the command line

Method Details

getTempFolder

public String getTempFolder()

Returns the temp folder, an empty string if not set.

Returns:

the temp folder

getPaths

public HashMap<String,String> getPaths()

Returns the specific paths provided by the user in a map: Path id > path.

Returns:

the specific paths provided by the user

hasInput

public boolean hasInput()

Indicates whether the user gave some path configuration input.

Returns:

a boolean indicating whether the user gave some path configuration input.

getLogFolder

public File getLogFolder()

Returns the folder where to save the log files.

Returns:

the folder where to save the log files