Package eu.isas.peptideshaker.export

Class ProjectExport

java.lang.Object
eu.isas.peptideshaker.export.ProjectExport
public class ProjectExport
extends Object
This class takes care of exporting the entire project as a single file.
Author:
Marc Vaudel

  • Field Summary

    Fields 
    Modifier and Type Field Description
    static String DEFAULT_DATA_FOLDER
    The name of the folder where to save the spectrum and FASTA files.
    static String DEFAULT_REPORTS_FOLDER
    The name of the folder where to save report files.

  • Constructor Summary

    Constructors 
    Constructor Description
    ProjectExport()  

  • Method Summary

    Modifier and Type Method Description
    static void exportProjectAsZip​(File zipFile, File fastaFile, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, File psdbFile, boolean moveFilesIntoZip, com.compomics.util.waiting.WaitingHandler waitingHandler)
    Exports the project as zip file.
    static void exportProjectAsZip​(File zipFile, File fastaFile, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, ArrayList<File> followupAnalysisFiles, ArrayList<File> reportFiles, File mzidFile, File psdbFile, boolean moveFilesIntoZip, com.compomics.util.waiting.WaitingHandler waitingHandler)
    Exports the project as zip file adding reports to it.

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Field Details

  • Constructor Details

  • Method Details

    • exportProjectAsZip

      public static void exportProjectAsZip​(File zipFile, File fastaFile, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, File psdbFile, boolean moveFilesIntoZip, com.compomics.util.waiting.WaitingHandler waitingHandler) throws IOException
      Exports the project as zip file.
      Parameters:
      zipFile - the destination file
      fastaFile - path to the FASTA file
      spectrumProvider - the spectrum provider
      psdbFile - the psdb file
      moveFilesIntoZip - if true, the files will be moved into the zip file, i.e. not just copied
      waitingHandler - a waiting handler to display progress to the user and cancel the process (can be null)
      Throws:
      IOException - exception thrown whenever a problem occurred while reading/writing the file

    • exportProjectAsZip

      public static void exportProjectAsZip​(File zipFile, File fastaFile, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, ArrayList<File> followupAnalysisFiles, ArrayList<File> reportFiles, File mzidFile, File psdbFile, boolean moveFilesIntoZip, com.compomics.util.waiting.WaitingHandler waitingHandler) throws IOException
      Exports the project as zip file adding reports to it.
      Parameters:
      zipFile - the destination file
      fastaFile - path to the FASTA file
      spectrumProvider - the spectrum provider
      followupAnalysisFiles - followup analysis files
      reportFiles - the identification features report files
      mzidFile - the mzid file
      psdbFile - the psdb file
      moveFilesIntoZip - if true, the files will be moved into the zip file, i.e. not just copied
      waitingHandler - a waiting handler to display progress to the user and cancel the process (can be null)
      Throws:
      IOException - exception thrown whenever a problem occurred while reading/writing the file