Package eu.isas.peptideshaker.export

Class UnipeptExport

java.lang.Object
eu.isas.peptideshaker.export.UnipeptExport
public class UnipeptExport
extends Object
Export peptide sequences to the Unipept web interface.
Author:
Tim Van Den Bossche, Pieter Verschaffelt, Thilo Muth, Harald Barsnes, Marc Vaudel

  • Constructor Summary

    Constructors 
    Constructor Description
    UnipeptExport()  

  • Method Summary

    Modifier and Type Method Description
    static void analyzeInUnipept​(List<String> peptides, boolean equateIandL, boolean filterDuplicates, boolean handleMissingCleavage, File tempHtmlFile, com.compomics.util.waiting.WaitingHandler waitingHandler)
    Analyze the given list of peptides, with the specified configuration, using the Unipept web interface.

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

  • Method Details

    • analyzeInUnipept

      public static void analyzeInUnipept​(List<String> peptides, boolean equateIandL, boolean filterDuplicates, boolean handleMissingCleavage, File tempHtmlFile, com.compomics.util.waiting.WaitingHandler waitingHandler) throws IOException
      Analyze the given list of peptides, with the specified configuration, using the Unipept web interface.
      Parameters:
      peptides - a list of peptides that should be analyzed using Unipept
      equateIandL - true if the amino acids I and L should be equated
      filterDuplicates - true if duplicate peptide sequences should be filtered
      handleMissingCleavage - true if missing cleavage handling should be enabled
      tempHtmlFile - the temporary file for Unipept HTML forwarding
      waitingHandler - the waiting handler
      Throws:
      IOException - thrown if something goes wrong with the export