java.lang.Object

java.lang.Enum<PsPeptideFeature>

eu.isas.peptideshaker.export.exportfeatures.PsPeptideFeature

All Implemented Interfaces:: com.compomics.util.io.export.ExportFeature, Serializable, Comparable<PsPeptideFeature>, java.lang.constant.Constable

public enum PsPeptideFeature
extends Enum<PsPeptideFeature>
implements com.compomics.util.io.export.ExportFeature

This class lists the peptide identification features.

Author:: Marc Vaudel

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum
Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants
Enum Constant	Description
`aaAfter`
`aaBefore`
`accessions`
`ambiguous_modification_sites`
`ambiguous_modification_sites_number`
`ambiguous_phosphosites`
`ambiguous_phosphosites_number`
`best_protein_group_validation`
`confidence`
`confident_modification_sites`
`confident_modification_sites_number`
`confident_phosphosites`
`confident_phosphosites_number`
`d_score`
`decoy`
`fixed_ptms`
`hidden`
`localization_confidence`
`missed_cleavages`
`modified_sequence`
`nValidatedProteinGroups`
`pi`
`position`
`probabilistic_score`
`protein_description`
`protein_groups`
`psms`
`raw_score`
`score`
`sequence`
`starred`
`unique_group`
`validated`
`validated_psms`
`variable_ptms`

Field Summary

Fields
Modifier and Type	Field	Description
`String`	`description`	The description of the feature.
`String`	`title`	The title of the feature which will be used for column heading.
`static String`	`type`	The type of export feature.

Fields inherited from interface com.compomics.util.io.export.ExportFeature

serialVersionUID

Method Summary

Modifier and Type	Method	Description
`String`	`getDescription()`
`ArrayList<com.compomics.util.io.export.ExportFeature>`	`getExportFeatures(boolean includeSubFeatures)`
`String`	`getFeatureFamily()`
`String`	`getTitle()`
`boolean`	`isAdvanced()`
`static PsPeptideFeature`	`valueOf(String name)`	Returns the enum constant of this type with the specified name.
`static PsPeptideFeature[]`	`values()`	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details
- starred
  
  public static final PsPeptideFeature starred
- pi
  
  public static final PsPeptideFeature pi
- accessions
  
  public static final PsPeptideFeature accessions
- protein_description
  
  public static final PsPeptideFeature protein_description
- protein_groups
  
  public static final PsPeptideFeature protein_groups
- best_protein_group_validation
  
  public static final PsPeptideFeature best_protein_group_validation
- nValidatedProteinGroups
  
  public static final PsPeptideFeature nValidatedProteinGroups
- unique_group
  
  public static final PsPeptideFeature unique_group
- sequence
  
  public static final PsPeptideFeature sequence
- modified_sequence
  
  public static final PsPeptideFeature modified_sequence
- position
  
  public static final PsPeptideFeature position
- aaBefore
  
  public static final PsPeptideFeature aaBefore
- aaAfter
  
  public static final PsPeptideFeature aaAfter
- missed_cleavages
  
  public static final PsPeptideFeature missed_cleavages
- variable_ptms
  
  public static final PsPeptideFeature variable_ptms
- fixed_ptms
  
  public static final PsPeptideFeature fixed_ptms
- localization_confidence
  
  public static final PsPeptideFeature localization_confidence
- probabilistic_score
  
  public static final PsPeptideFeature probabilistic_score
- d_score
  
  public static final PsPeptideFeature d_score
- confident_modification_sites
  
  public static final PsPeptideFeature confident_modification_sites
- confident_modification_sites_number
  
  public static final PsPeptideFeature confident_modification_sites_number
- ambiguous_modification_sites
  
  public static final PsPeptideFeature ambiguous_modification_sites
- ambiguous_modification_sites_number
  
  public static final PsPeptideFeature ambiguous_modification_sites_number
- confident_phosphosites
  
  public static final PsPeptideFeature confident_phosphosites
- confident_phosphosites_number
  
  public static final PsPeptideFeature confident_phosphosites_number
- ambiguous_phosphosites
  
  public static final PsPeptideFeature ambiguous_phosphosites
- ambiguous_phosphosites_number
  
  public static final PsPeptideFeature ambiguous_phosphosites_number
- psms
  
  public static final PsPeptideFeature psms
- validated_psms
  
  public static final PsPeptideFeature validated_psms
- raw_score
  
  public static final PsPeptideFeature raw_score
- score
  
  public static final PsPeptideFeature score
- confidence
  
  public static final PsPeptideFeature confidence
- decoy
  
  public static final PsPeptideFeature decoy
- validated
  
  public static final PsPeptideFeature validated
- hidden
  
  public static final PsPeptideFeature hidden
Field Details
- title
  
  public String title
  
  The title of the feature which will be used for column heading.
- description
  
  public String description
  
  The description of the feature.
- type
  
  public static final String type
  
  The type of export feature.
  
  See Also:
  
  Constant Field Values
Method Details
- values
  
  public static PsPeptideFeature[] values()
  
  Returns an array containing the constants of this enum type, in the order they are declared.
  
  Returns:
  
  an array containing the constants of this enum type, in the order they are declared
- valueOf
  
  public static PsPeptideFeature valueOf(String name)
  
  Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
  
  Parameters:
  
  name - the name of the enum constant to be returned.
  
  Returns:
  
  the enum constant with the specified name
  
  Throws:
  
  IllegalArgumentException - if this enum type has no constant with the specified name
  
  NullPointerException - if the argument is null
- getExportFeatures
  
  public ArrayList<com.compomics.util.io.export.ExportFeature> getExportFeatures(boolean includeSubFeatures)
  
  Specified by:
  
  getExportFeatures in interface com.compomics.util.io.export.ExportFeature
- getTitle
  
  public String getTitle()
  
  Specified by:
  
  getTitle in interface com.compomics.util.io.export.ExportFeature
- getDescription
  
  public String getDescription()
  
  Specified by:
  
  getDescription in interface com.compomics.util.io.export.ExportFeature
- getFeatureFamily
  
  public String getFeatureFamily()
  
  Specified by:
  
  getFeatureFamily in interface com.compomics.util.io.export.ExportFeature
- isAdvanced
  
  public boolean isAdvanced()
  
  Specified by:
  
  isAdvanced in interface com.compomics.util.io.export.ExportFeature

Enum PsPeptideFeature

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum Constant Summary

Field Summary

Fields inherited from interface com.compomics.util.io.export.ExportFeature

Method Summary

Methods inherited from class java.lang.Enum

Methods inherited from class java.lang.Object

Enum Constant Details

Field Details

Method Details