Package eu.isas.peptideshaker.export.exportfeatures

Enum PsPsmFeature

java.lang.Object

java.lang.Enum<PsPsmFeature>

eu.isas.peptideshaker.export.exportfeatures.PsPsmFeature

All Implemented Interfaces:

com.compomics.util.io.export.ExportFeature, Serializable, Comparable<PsPsmFeature>, java.lang.constant.Constable

public enum PsPsmFeature
extends Enum<PsPsmFeature>
implements com.compomics.util.io.export.ExportFeature

This class lists the PSM identification features.

Author:

Marc Vaudel

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants

Enum Constant	Description
algorithm_score
ambiguous_modification_sites
ambiguous_modification_sites_number
ambiguous_phosphosites
ambiguous_phosphosites_number
best_protein_group_validation
confidence
confident_modification_sites
confident_modification_sites_number
confident_phosphosites
confident_phosphosites_number
d_score
hidden
id
localization_confidence
probabilistic_score
protein_groups
raw_score
score
starred
validated

Field Summary

Fields

Modifier and Type	Field	Description
String	description	The description of the feature.
String	title	The title of the feature which will be used for column heading.
static String	type	The type of export feature.

Fields inherited from interface com.compomics.util.io.export.ExportFeature

serialVersionUID

Method Summary

Modifier and Type	Method	Description
String	getDescription()
ArrayList<com.compomics.util.io.export.ExportFeature>	getExportFeatures(boolean includeSubFeatures)
String	getFeatureFamily()
String	getTitle()
boolean	isAdvanced()
static PsPsmFeature	valueOf(String name)	Returns the enum constant of this type with the specified name.
static PsPsmFeature[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details

starred

public static final PsPsmFeature starred

id

public static final PsPsmFeature id

protein_groups

public static final PsPsmFeature protein_groups

best_protein_group_validation

public static final PsPsmFeature best_protein_group_validation

localization_confidence

public static final PsPsmFeature localization_confidence

probabilistic_score

public static final PsPsmFeature probabilistic_score

d_score

public static final PsPsmFeature d_score

confident_modification_sites

public static final PsPsmFeature confident_modification_sites

confident_modification_sites_number

public static final PsPsmFeature confident_modification_sites_number

ambiguous_modification_sites

public static final PsPsmFeature ambiguous_modification_sites

ambiguous_modification_sites_number

public static final PsPsmFeature ambiguous_modification_sites_number

confident_phosphosites

public static final PsPsmFeature confident_phosphosites

confident_phosphosites_number

public static final PsPsmFeature confident_phosphosites_number

ambiguous_phosphosites

public static final PsPsmFeature ambiguous_phosphosites

ambiguous_phosphosites_number

public static final PsPsmFeature ambiguous_phosphosites_number

algorithm_score

public static final PsPsmFeature algorithm_score

raw_score

public static final PsPsmFeature raw_score

score

public static final PsPsmFeature score

confidence

public static final PsPsmFeature confidence

validated

public static final PsPsmFeature validated

hidden

public static final PsPsmFeature hidden

Field Details

title

public String title

The title of the feature which will be used for column heading.

description

public String description

The description of the feature.

type

public static final String type

The type of export feature.

See Also:

Constant Field Values

Method Details

values

public static PsPsmFeature[] values()

Returns an array containing the constants of this enum type, in the order they are declared.

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static PsPsmFeature valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getExportFeatures

public ArrayList<com.compomics.util.io.export.ExportFeature> getExportFeatures(boolean includeSubFeatures)

Specified by:

getExportFeatures in interface com.compomics.util.io.export.ExportFeature

getTitle

public String getTitle()

Specified by:

getTitle in interface com.compomics.util.io.export.ExportFeature

getDescription

public String getDescription()

Specified by:

getDescription in interface com.compomics.util.io.export.ExportFeature

getFeatureFamily

public String getFeatureFamily()

Specified by:

getFeatureFamily in interface com.compomics.util.io.export.ExportFeature

isAdvanced

public boolean isAdvanced()

Specified by:

isAdvanced in interface com.compomics.util.io.export.ExportFeature