java.lang.Object

java.lang.Enum<PsValidationFeature>

eu.isas.peptideshaker.export.exportfeatures.PsValidationFeature

All Implemented Interfaces:: com.compomics.util.io.export.ExportFeature, Serializable, Comparable<PsValidationFeature>, java.lang.constant.Constable

public enum PsValidationFeature
extends Enum<PsValidationFeature>
implements com.compomics.util.io.export.ExportFeature

This enum lists the export features linked to the validation process.

Author:: Marc Vaudel

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum
Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants
Enum Constant	Description
`peptide_accuracy`
`peptide_confidence`
`peptide_fdr`
`peptide_fnr`
`peptide_pep`
`protein_accuracy`
`protein_confidence`
`protein_fdr`
`protein_fnr`
`protein_pep`
`psm_accuracy`
`psm_confidence`
`psm_fdr`
`psm_fnr`
`psm_pep`
`total_peptide`
`total_protein`
`total_psm`
`validated_peptide`
`validated_protein`
`validated_psm`

Field Summary

Fields
Modifier and Type	Field	Description
`String`	`description`	The description of the feature.
`String`	`title`	The title of the feature which will be used for column heading.
`static String`	`type`	The type of export feature.

Fields inherited from interface com.compomics.util.io.export.ExportFeature

serialVersionUID

Method Summary

Modifier and Type	Method	Description
`String`	`getDescription()`
`ArrayList<com.compomics.util.io.export.ExportFeature>`	`getExportFeatures(boolean includeSubFeatures)`
`String`	`getFeatureFamily()`
`String`	`getTitle()`
`boolean`	`isAdvanced()`
`static PsValidationFeature`	`valueOf(String name)`	Returns the enum constant of this type with the specified name.
`static PsValidationFeature[]`	`values()`	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details
- validated_protein
  
  public static final PsValidationFeature validated_protein
- total_protein
  
  public static final PsValidationFeature total_protein
- protein_fdr
  
  public static final PsValidationFeature protein_fdr
- protein_fnr
  
  public static final PsValidationFeature protein_fnr
- protein_confidence
  
  public static final PsValidationFeature protein_confidence
- protein_pep
  
  public static final PsValidationFeature protein_pep
- protein_accuracy
  
  public static final PsValidationFeature protein_accuracy
- validated_peptide
  
  public static final PsValidationFeature validated_peptide
- total_peptide
  
  public static final PsValidationFeature total_peptide
- peptide_fdr
  
  public static final PsValidationFeature peptide_fdr
- peptide_fnr
  
  public static final PsValidationFeature peptide_fnr
- peptide_confidence
  
  public static final PsValidationFeature peptide_confidence
- peptide_pep
  
  public static final PsValidationFeature peptide_pep
- peptide_accuracy
  
  public static final PsValidationFeature peptide_accuracy
- validated_psm
  
  public static final PsValidationFeature validated_psm
- total_psm
  
  public static final PsValidationFeature total_psm
- psm_fdr
  
  public static final PsValidationFeature psm_fdr
- psm_fnr
  
  public static final PsValidationFeature psm_fnr
- psm_confidence
  
  public static final PsValidationFeature psm_confidence
- psm_pep
  
  public static final PsValidationFeature psm_pep
- psm_accuracy
  
  public static final PsValidationFeature psm_accuracy
Field Details
- title
  
  public String title
  
  The title of the feature which will be used for column heading.
- description
  
  public String description
  
  The description of the feature.
- type
  
  public static final String type
  
  The type of export feature.
  
  See Also:
  
  Constant Field Values
Method Details
- values
  
  public static PsValidationFeature[] values()
  
  Returns an array containing the constants of this enum type, in the order they are declared.
  
  Returns:
  
  an array containing the constants of this enum type, in the order they are declared
- valueOf
  
  public static PsValidationFeature valueOf(String name)
  
  Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
  
  Parameters:
  
  name - the name of the enum constant to be returned.
  
  Returns:
  
  the enum constant with the specified name
  
  Throws:
  
  IllegalArgumentException - if this enum type has no constant with the specified name
  
  NullPointerException - if the argument is null
- getExportFeatures
  
  public ArrayList<com.compomics.util.io.export.ExportFeature> getExportFeatures(boolean includeSubFeatures)
  
  Specified by:
  
  getExportFeatures in interface com.compomics.util.io.export.ExportFeature
- getTitle
  
  public String getTitle()
  
  Specified by:
  
  getTitle in interface com.compomics.util.io.export.ExportFeature
- getDescription
  
  public String getDescription()
  
  Specified by:
  
  getDescription in interface com.compomics.util.io.export.ExportFeature
- getFeatureFamily
  
  public String getFeatureFamily()
  
  Specified by:
  
  getFeatureFamily in interface com.compomics.util.io.export.ExportFeature
- isAdvanced
  
  public boolean isAdvanced()
  
  Specified by:
  
  isAdvanced in interface com.compomics.util.io.export.ExportFeature

Enum PsValidationFeature

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum Constant Summary

Field Summary

Fields inherited from interface com.compomics.util.io.export.ExportFeature

Method Summary

Methods inherited from class java.lang.Enum

Methods inherited from class java.lang.Object

Enum Constant Details

Field Details

Method Details