Uses of Class
eu.isas.peptideshaker.export.exportfeatures.PsIdentificationAlgorithmMatchesFeature

Packages that use PsIdentificationAlgorithmMatchesFeature

Package	Description
eu.isas.peptideshaker.export.exportfeatures	Export features.
eu.isas.peptideshaker.export.sections	Export sections.

Uses of PsIdentificationAlgorithmMatchesFeature in eu.isas.peptideshaker.export.exportfeatures

Methods in eu.isas.peptideshaker.export.exportfeatures that return PsIdentificationAlgorithmMatchesFeature

Modifier and Type	Method	Description
static PsIdentificationAlgorithmMatchesFeature	PsIdentificationAlgorithmMatchesFeature.valueOf(String name)	Returns the enum constant of this type with the specified name.
static PsIdentificationAlgorithmMatchesFeature[]	PsIdentificationAlgorithmMatchesFeature.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Uses of PsIdentificationAlgorithmMatchesFeature in eu.isas.peptideshaker.export.sections

Methods in eu.isas.peptideshaker.export.sections with parameters of type PsIdentificationAlgorithmMatchesFeature

Modifier and Type	Method	Description
static String	PsIdentificationAlgorithmMatchesSection.getPeptideAssumptionFeature(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, com.compomics.util.experiment.io.biology.protein.SequenceProvider sequenceProvider, com.compomics.util.experiment.io.biology.protein.ProteinDetailsProvider proteinDetailsProvider, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, com.compomics.util.parameters.identification.IdentificationParameters identificationParameters, String linePrefix, int nSurroundingAA, com.compomics.util.experiment.identification.spectrum_assumptions.PeptideAssumption peptideAssumption, String spectrumFile, String spectrumTitle, com.compomics.util.experiment.identification.peptide_shaker.PSParameter psParameter, PsIdentificationAlgorithmMatchesFeature exportFeature, com.compomics.util.waiting.WaitingHandler waitingHandler)	Writes the feature associated to the match of the given peptide assumption.
static String	PsIdentificationAlgorithmMatchesSection.getTagAssumptionFeature(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, com.compomics.util.parameters.identification.IdentificationParameters identificationParameters, String linePrefix, com.compomics.util.experiment.identification.spectrum_assumptions.TagAssumption tagAssumption, String spectrumFile, String spectrumTitle, com.compomics.util.experiment.identification.peptide_shaker.PSParameter psParameter, PsIdentificationAlgorithmMatchesFeature exportFeature, com.compomics.util.waiting.WaitingHandler waitingHandler)	Writes the feature associated to the match of the given tag assumption.