Class ModificationSpecificMap
java.lang.Object
com.compomics.util.experiment.personalization.ExperimentObject
eu.isas.peptideshaker.scoring.maps.SpecificTargetDecoyMap
eu.isas.peptideshaker.scoring.maps.specific.ModificationSpecificMap
- All Implemented Interfaces:
Serializable
public class ModificationSpecificMap extends SpecificTargetDecoyMap
Modification specific target decoy map.
- Author:
- Marc Vaudel
- See Also:
- Serialized Form
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Field Summary
Fields Modifier and Type Field Description static StringGARBAGEThe name of the garbage category.static intGARBAGE_KEYThe key of the garbage category.Fields inherited from class eu.isas.peptideshaker.scoring.maps.SpecificTargetDecoyMap
fileSpecificGrouping, fileSpecificMaps, groupedMaps, grouping -
Constructor Summary
Constructors Constructor Description ModificationSpecificMap() -
Method Summary
Modifier and Type Method Description voidclean(double minimalFDR)Handles sparse maps.Methods inherited from class eu.isas.peptideshaker.scoring.maps.SpecificTargetDecoyMap
addPoint, estimateProbabilities, getCategoriesFromGroupedFiles, getChargeGroupingMap, getCorrectedCharge, getFilesAtCategory, getGroupedCategories, getMapsSize, getPossibleCategories, getProbability, getTargetDecoyMap, getTargetDecoyMaps, isFileGrouped
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Field Details
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GARBAGE
The name of the garbage category.- See Also:
- Constant Field Values
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GARBAGE_KEY
public static final int GARBAGE_KEYThe key of the garbage category.
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Constructor Details
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ModificationSpecificMap
public ModificationSpecificMap()
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Method Details
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clean
public void clean(double minimalFDR)Description copied from class:SpecificTargetDecoyMapHandles sparse maps.- Specified by:
cleanin classSpecificTargetDecoyMap- Parameters:
minimalFDR- the minimal FDR which should be achievable
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