Uses of Package
eu.isas.peptideshaker.scoring.targetdecoy
| Package | Description |
|---|---|
| eu.isas.peptideshaker.gui |
GUI dialogs and helper classes.
|
| eu.isas.peptideshaker.protein_inference |
Protein inference classes.
|
| eu.isas.peptideshaker.scoring |
Identification scoring.
|
| eu.isas.peptideshaker.scoring.maps |
Target decoy maps.
|
| eu.isas.peptideshaker.scoring.psm_scoring |
PSM scoring.
|
| eu.isas.peptideshaker.scoring.targetdecoy |
Target/decoy related classes.
|
| eu.isas.peptideshaker.validation |
Matches validation.
|
-
Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.gui Class Description TargetDecoyMap This map contains the information of a target/decoy strategy. -
Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.protein_inference Class Description TargetDecoyMap This map contains the information of a target/decoy strategy. -
Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.scoring Class Description TargetDecoyMap This map contains the information of a target/decoy strategy. -
Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.scoring.maps Class Description TargetDecoyMap This map contains the information of a target/decoy strategy. -
Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.scoring.psm_scoring Class Description TargetDecoyMap This map contains the information of a target/decoy strategy. -
Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.scoring.targetdecoy Class Description TargetDecoyMap This map contains the information of a target/decoy strategy.TargetDecoyPoint This class represents a target/decoy hit in its simplest form.TargetDecoyResults This class will compile Target/decoy results of a certain target/decoy map according to user's validation criteriaTargetDecoySeries This class will contain the PEP, FDR and FNR values of a target decoy map directly available for plotting. -
Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.validation Class Description TargetDecoyMap This map contains the information of a target/decoy strategy.