Uses of Class
eu.isas.peptideshaker.utils.DisplayFeaturesGenerator

Packages that use DisplayFeaturesGenerator 
Package Description
eu.isas.peptideshaker.gui
GUI dialogs and helper classes.
eu.isas.peptideshaker.gui.tablemodels
Table models.

  • Uses of DisplayFeaturesGenerator in eu.isas.peptideshaker.gui

    Methods in eu.isas.peptideshaker.gui that return DisplayFeaturesGenerator 
    Modifier and Type Method Description
    DisplayFeaturesGenerator PeptideShakerGUI.getDisplayFeaturesGenerator()
    Returns the display features generator.

  • Uses of DisplayFeaturesGenerator in eu.isas.peptideshaker.gui.tablemodels

    Methods in eu.isas.peptideshaker.gui.tablemodels with parameters of type DisplayFeaturesGenerator 
    Modifier and Type Method Description
    void PeptideTableModel.updateDataModel​(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, DisplayFeaturesGenerator displayFeaturesGenerator, String proteinAccession, long[] peptideKeys)
    Update the data in the table model without having to reset the whole table model.
    void ProteinTableModel.updateDataModel​(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, com.compomics.util.experiment.io.biology.protein.ProteinDetailsProvider proteinDetailsProvider, com.compomics.util.experiment.io.biology.protein.SequenceProvider sequenceProvider, com.compomics.util.experiment.biology.genes.GeneMaps geneMaps, DisplayFeaturesGenerator displayFeaturesGenerator, long[] proteinKeys)
    Update the data in the table model without having to reset the whole table model.
    void PsmTableModel.updateDataModel​(com.compomics.util.experiment.identification.Identification identification, DisplayFeaturesGenerator displayFeaturesGenerator, com.compomics.util.parameters.identification.IdentificationParameters identificationParameters, long[] psmKeys)
    Update the data in the table model without having to reset the whole table model.
    Constructors in eu.isas.peptideshaker.gui.tablemodels with parameters of type DisplayFeaturesGenerator 
    Constructor Description
    PeptideFractionTableModel​(com.compomics.util.experiment.identification.Identification identification, DisplayFeaturesGenerator displayFeaturesGenerator, ArrayList<Long> peptideKeys, ArrayList<String> fileNames)
    Constructor which sets a new table.
    PeptideTableModel​(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, DisplayFeaturesGenerator displayFeaturesGenerator, String proteinAccession, long[] peptideKeys, boolean displayScores, com.compomics.util.exceptions.ExceptionHandler exceptionHandler)
    Constructor which sets a new table.
    ProteinGoTableModel​(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.io.biology.protein.ProteinDetailsProvider proteinDetailsProvider, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, DisplayFeaturesGenerator displayFeaturesGenerator, ArrayList<Long> proteinGroupKeys, boolean showScores)
    Constructor which sets a new table.
    ProteinTableModel​(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, com.compomics.util.experiment.io.biology.protein.ProteinDetailsProvider proteinDetailsProvider, com.compomics.util.experiment.io.biology.protein.SequenceProvider sequenceProvider, com.compomics.util.experiment.biology.genes.GeneMaps geneMaps, DisplayFeaturesGenerator displayFeaturesGenerator, com.compomics.util.exceptions.ExceptionHandler exceptionHandler, long[] proteinKeys)
    Constructor.
    PsmTableModel​(com.compomics.util.experiment.identification.Identification identification, DisplayFeaturesGenerator displayFeaturesGenerator, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, com.compomics.util.parameters.identification.IdentificationParameters identificationParameters, long[] psmKeys, boolean displayScores, com.compomics.util.exceptions.ExceptionHandler exceptionHandler)
    Constructor which sets a new table.