All Classes
AnnotationPanel
BestMatchSelection
CLIExportMethods
DatabaseHelpDialog
DeepLcExport
DeepLcUtils
DisplayFeaturesGenerator
DisplayParameters
DisplayPreferencesDialog
ExportFactoryMarshaller
FastaExport
FastaExport.ExportType
FeaturesExportDialog
FileImporter
FiltersDialog
FollowUpCLI
FollowUpCLIInputBean
FollowUpCLIParams
FollowUpExportDialog
FractionDetailsDialog
GettingStartedDialog
GOEAPanel
GroupSimplification
IdentificationParametersCLI
IdImporter
IdToSpectrumFileMappingDialog
ImageIconPanel
InclusionListExport
InclusionListExport.ExportFormat
InclusionListExport.PeptideFilterType
InclusionListExportDialog
InputMap
JumpToPanel
JumpToPanel.JumpType
MatchesValidator
MatchValidationDialog
MatchValidationDialog.MatchType
MethodsSectionDialog
ModificationDialog
ModificationLocalizationScorer
ModificationSiteInferenceDialog
ModificationsPanel
ModificationSpecificMap
Ms2PipExport
Ms2PipUtils
MzidCLI
MzidCLIInputBean
MzidCLIParams
MzIdentMLExport
MzIdentMLExportDialog
NewDialog
OverviewPanel
PathSettingsCLI
PathSettingsCLIInputBean
PathSettingsCLIParams
PeptideChecker
PeptideFractionTableModel
PeptideShaker
PeptideShakerCLI
PeptideShakerCLIInputBean
PeptideShakerCLIParams
PeptideShakerGUI
PeptideShakerIdentificationParametersCLIParams
PeptideShakerMethods
PeptideShakerParameters
PeptideShakerPathParameters
PeptideShakerPathParameters.PeptideShakerPathKey
PeptideShakerWrapper
PeptideShakerZipFileChecker
PeptideTableModel
PepXmlExport
PercolatorExport
PercolatorUtils
PrideDataTypeSelectionDialog
PrideFreeTextSearchDialog
PridePrivateDataDialog
PrideReshakeGUI
PrideReshakeSetupDialog
PrideSearchParametersDialog
ProgenesisExport
ProgenesisExport.ExportType
ProjectDetails
ProjectDetailsDialog
ProjectExport
ProjectParametersDialog
ProjectsFilterDialog
Properties
ProteinAnnotations
ProteinFractionsPanel
ProteinFractionTableModel
ProteinGoTableModel
ProteinInference
ProteinInference.GroupSimplificationOption
ProteinInferenceDialog
ProteinInferenceGraphLegendDialog
ProteinInferenceGraphPanel
ProteinInferenceGraphSelectionDialog
ProteinInferencePeptideLevelDialog
ProteinProcessor
ProteinSequencePanel
ProteinSequencePanelParent
ProteinStructurePanel
ProteinTableModel
ProteoformExport
PsAnnotationSection
PsdbExporter
PsdbParent
PSExportFactory
PsExportStyle
PsFragmentSection
PsIdentificationAlgorithmMatchesSection
PsInputFilterSection
PSMaps
PsmFirstHitRunnable
PsmImporter
PsmImportRunnable
PsmProcessor
PsmProcessorRunnable
PsmScorer
PsmTableModel
PsPeptideSection
PsProjectSection
PsProteinSection
PsPsmSection
PsPtmScoringSection
PsSearchParametersSection
PsSpectrumCountingSection
PsValidationSection
PsZipUtils
PtmSelectionDialog
QCPanel
RecalibrationExporter
ReportCLI
ReportCLIInputBean
ReportCLIParams
ResidueAnnotation
RunMzDeviation
SaveDialog
SimpleSpecificMap
SpecificTargetDecoyMap
SpectrumColorsDialog
SpectrumCountingSettingsDialog
SpectrumExporter
SpectrumExporter.ExportType
SpectrumIdentificationPanel
SpectrumRecalibrator
StarHider
Stirred
StirredCLI
StirredOptions
StirredOptionsBean
StirRunnable
TagMapper
TargetDecoyMap
TargetDecoyPoint
TargetDecoyResults
TargetDecoySeries
TieBreaker
Tips
UnipeptExport
UserParameters
UserPreferencesParent
ValidationPanel
WelcomeDialog