eu.isas.peptideshaker.cmd

Class PathSettingsCLIInputBean

java.lang.Object

eu.isas.peptideshaker.cmd.PathSettingsCLIInputBean

public class PathSettingsCLIInputBean
extends Object

Parses the command line and retrieves the user input.

Author:

Marc Vaudel, Harald Barsnes

Constructor Summary

Constructors

Constructor and Description
PathSettingsCLIInputBean(org.apache.commons.cli.CommandLine aLine) Construct a FollowUpCLIInputBean from an Apache CLI instance.

Method Summary

Modifier and Type	Method and Description
File	getLogFolder() Returns the folder where to save the log files.
HashMap<String,String>	getPaths() Returns the specific paths provided by the user in a map: Path id > path.
String	getTempFolder() Returns the temp folder, an empty string if not set.
boolean	hasInput() Indicates whether the user gave some path configuration input.
boolean	useLogFile() Return true if a log file is to be used.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PathSettingsCLIInputBean

public PathSettingsCLIInputBean(org.apache.commons.cli.CommandLine aLine)

Construct a FollowUpCLIInputBean from an Apache CLI instance.

Parameters:

aLine - the command line

Method Detail

getTempFolder

public String getTempFolder()

Returns the temp folder, an empty string if not set.

Returns:

the temp folder

getPaths

public HashMap<String,String> getPaths()

Returns the specific paths provided by the user in a map: Path id > path.

Returns:

the specific paths provided by the user

hasInput

public boolean hasInput()

Indicates whether the user gave some path configuration input.

Returns:

a boolean indicating whether the user gave some path configuration input.

getLogFolder

public File getLogFolder()

Returns the folder where to save the log files.

Returns:

the folder where to save the log files

useLogFile

public boolean useLogFile()

Return true if a log file is to be used. False, sends the logs to the standard output.

Returns:

true if a log file is to be used, false sends the logs to the standard output