Hierarchy For Package eu.isas.peptideshaker.cmd

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • com.compomics.cli.identification_parameters.AbstractIdentificationParametersCli (implements java.util.concurrent.Callable<V>)
    • eu.isas.peptideshaker.cmd.IdentificationParametersCLI
  • eu.isas.peptideshaker.cmd.CLIExportMethods
  • eu.isas.peptideshaker.cmd.FollowUpCLIInputBean
  • eu.isas.peptideshaker.cmd.MzidCLIInputBean
  • eu.isas.peptideshaker.cmd.PathSettingsCLI
  • eu.isas.peptideshaker.cmd.PathSettingsCLIInputBean
  • eu.isas.peptideshaker.cmd.PeptideShakerCLIInputBean
  • eu.isas.peptideshaker.cmd.PeptideShakerIdentificationParametersCLIParams
  • eu.isas.peptideshaker.cmd.ReportCLIInputBean
  • eu.isas.peptideshaker.cmd.StirredCLI
  • eu.isas.peptideshaker.cmd.StirredOptionsBean
  • eu.isas.peptideshaker.preferences.UserPreferencesParent
    • eu.isas.peptideshaker.utils.PsdbParent (implements java.lang.AutoCloseable)
      • eu.isas.peptideshaker.cmd.FollowUpCLI
      • eu.isas.peptideshaker.cmd.MzidCLI
      • eu.isas.peptideshaker.cmd.PeptideShakerCLI (implements java.util.concurrent.Callable<V>)
      • eu.isas.peptideshaker.cmd.ReportCLI

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • eu.isas.peptideshaker.cmd.StirredOptions
    • eu.isas.peptideshaker.cmd.ReportCLIParams
    • eu.isas.peptideshaker.cmd.PeptideShakerCLIParams
    • eu.isas.peptideshaker.cmd.PathSettingsCLIParams
    • eu.isas.peptideshaker.cmd.MzidCLIParams
    • eu.isas.peptideshaker.cmd.FollowUpCLIParams