Uses of Package
eu.isas.peptideshaker.cmd

Packages that use eu.isas.peptideshaker.cmd

Package	Description
eu.isas.peptideshaker.cmd	Command line usage.

Classes in eu.isas.peptideshaker.cmd used by eu.isas.peptideshaker.cmd

Class and Description
FollowUpCLIInputBean This class is a simple bean wrapping the CLI parameters provided in an Options instance.
FollowUpCLIParams Enum class specifying the Command Line Parameters for follow up analysis.
MzidCLIInputBean This class is a simple bean wrapping the CLI parameters provided in an Options instance.
MzidCLIParams Enum class specifying the Command Line Parameters for mzid export.
PathSettingsCLIInputBean Parses the command line and retrieves the user input.
PathSettingsCLIParams Enum of the command line parameters for path setting.
PeptideShakerCLIInputBean This class is a simple bean wrapping the CLI parameters provided in an Options instance.
PeptideShakerCLIParams Enum class specifying the Command Line Parameters for PeptideShaker.
ReportCLIInputBean This class is a simple bean wrapping the CLI parameters provided in an Options instance.
ReportCLIParams This class provides the available reports as command line parameters.
StirredOptions Enum class specifying the ModificationsCLI parameters.