eu.isas.peptideshaker.export

Class ProjectExport

java.lang.Object

eu.isas.peptideshaker.export.ProjectExport

public class ProjectExport
extends Object

This class takes care of exporting the entire project as a single file.

Author:

Marc Vaudel

Field Summary

Fields

Modifier and Type	Field and Description
static String	DEFAULT_DATA_FOLDER The name of the folder where to save the spectrum and FASTA files.
static String	DEFAULT_REPORTS_FOLDER The name of the folder where to save report files.

Constructor Summary

Constructors

Constructor and Description
ProjectExport()

Method Summary

Modifier and Type	Method and Description
static void	exportProjectAsZip(File zipFile, File fastaFile, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, ArrayList<File> followupAnalysisFiles, ArrayList<File> reportFiles, File mzidFile, File psdbFile, boolean moveFilesIntoZip, com.compomics.util.waiting.WaitingHandler waitingHandler) Exports the project as zip file adding reports to it.
static void	exportProjectAsZip(File zipFile, File fastaFile, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, File psdbFile, boolean moveFilesIntoZip, com.compomics.util.waiting.WaitingHandler waitingHandler) Exports the project as zip file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_DATA_FOLDER

public static final String DEFAULT_DATA_FOLDER

The name of the folder where to save the spectrum and FASTA files.

See Also:

Constant Field Values

DEFAULT_REPORTS_FOLDER

public static final String DEFAULT_REPORTS_FOLDER

The name of the folder where to save report files.

See Also:

Constant Field Values

Constructor Detail

ProjectExport

public ProjectExport()

Method Detail

exportProjectAsZip

public static void exportProjectAsZip(File zipFile,
                                      File fastaFile,
                                      com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider,
                                      File psdbFile,
                                      boolean moveFilesIntoZip,
                                      com.compomics.util.waiting.WaitingHandler waitingHandler)
                               throws IOException

Exports the project as zip file.

Parameters:

zipFile - the destination file

fastaFile - path to the FASTA file

spectrumProvider - the spectrum provider

psdbFile - the psdb file

moveFilesIntoZip - if true, the files will be moved into the zip file, i.e. not just copied

waitingHandler - a waiting handler to display progress to the user and cancel the process (can be null)

Throws:

IOException - exception thrown whenever a problem occurred while reading/writing the file

exportProjectAsZip

public static void exportProjectAsZip(File zipFile,
                                      File fastaFile,
                                      com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider,
                                      ArrayList<File> followupAnalysisFiles,
                                      ArrayList<File> reportFiles,
                                      File mzidFile,
                                      File psdbFile,
                                      boolean moveFilesIntoZip,
                                      com.compomics.util.waiting.WaitingHandler waitingHandler)
                               throws IOException

Exports the project as zip file adding reports to it.

Parameters:

zipFile - the destination file

fastaFile - path to the FASTA file

spectrumProvider - the spectrum provider

followupAnalysisFiles - followup analysis files

reportFiles - the identification features report files

mzidFile - the mzid file

psdbFile - the psdb file

moveFilesIntoZip - if true, the files will be moved into the zip file, i.e. not just copied

waitingHandler - a waiting handler to display progress to the user and cancel the process (can be null)

Throws:

IOException - exception thrown whenever a problem occurred while reading/writing the file