eu.isas.peptideshaker.export.sections

Class PsSearchParametersSection

java.lang.Object

eu.isas.peptideshaker.export.sections.PsSearchParametersSection

public class PsSearchParametersSection
extends Object

This class outputs the search parameters related export features.

Author:

Marc Vaudel

Constructor Summary

Constructors

Constructor and Description
PsSearchParametersSection(ArrayList<com.compomics.util.io.export.ExportFeature> exportFeatures, boolean indexes, boolean header, com.compomics.util.io.export.ExportWriter writer) Constructor.

Method Summary

Modifier and Type	Method and Description
void	writeSection(com.compomics.util.parameters.identification.search.SearchParameters searchParameters, ProjectDetails projectDetails, com.compomics.util.waiting.WaitingHandler waitingHandler) Writes the desired section.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PsSearchParametersSection

public PsSearchParametersSection(ArrayList<com.compomics.util.io.export.ExportFeature> exportFeatures,
                                 boolean indexes,
                                 boolean header,
                                 com.compomics.util.io.export.ExportWriter writer)

Constructor.

Parameters:

exportFeatures - the features to export in this section

indexes - indicates whether the line index should be written

header - indicates whether the table header should be written

writer - the writer which will write to the file

Method Detail

writeSection

public void writeSection(com.compomics.util.parameters.identification.search.SearchParameters searchParameters,
                         ProjectDetails projectDetails,
                         com.compomics.util.waiting.WaitingHandler waitingHandler)
                  throws IOException

Writes the desired section.

Parameters:

searchParameters - the search parameters of this project

projectDetails - the project details

waitingHandler - the waiting handler

Throws:

IOException - exception thrown whenever an error occurred while writing the file