eu.isas.peptideshaker.export.sections

Class PsSpectrumCountingSection

java.lang.Object

eu.isas.peptideshaker.export.sections.PsSpectrumCountingSection

public class PsSpectrumCountingSection
extends Object

This class outputs the spectrum counting related export features.

Author:

Marc Vaudel

Constructor Summary

Constructors

Constructor and Description
PsSpectrumCountingSection(ArrayList<com.compomics.util.io.export.ExportFeature> exportFeatures, boolean indexes, boolean header, com.compomics.util.io.export.ExportWriter writer) Constructor.

Method Summary

Modifier and Type	Method and Description
void	writeSection(com.compomics.util.parameters.quantification.spectrum_counting.SpectrumCountingParameters spectrumCountingPreferences, com.compomics.util.waiting.WaitingHandler waitingHandler) Writes the desired section.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PsSpectrumCountingSection

public PsSpectrumCountingSection(ArrayList<com.compomics.util.io.export.ExportFeature> exportFeatures,
                                 boolean indexes,
                                 boolean header,
                                 com.compomics.util.io.export.ExportWriter writer)

Constructor.

Parameters:

exportFeatures - the features to export in this section

indexes - indicates whether the line index should be written

header - indicates whether the table header should be written

writer - the writer which will write to the file

Method Detail

writeSection

public void writeSection(com.compomics.util.parameters.quantification.spectrum_counting.SpectrumCountingParameters spectrumCountingPreferences,
                         com.compomics.util.waiting.WaitingHandler waitingHandler)
                  throws IOException

Writes the desired section.

Parameters:

spectrumCountingPreferences - the spectrum counting preferences of this project

waitingHandler - the waiting handler

Throws:

IOException - exception thrown whenever an error occurred while writing the file