Uses of Class
eu.isas.peptideshaker.followup.InclusionListExport.ExportFormat

Packages that use InclusionListExport.ExportFormat

Package	Description
eu.isas.peptideshaker.followup	Export for follow-up analysis.
eu.isas.peptideshaker.gui.export	GUI export dialogs.

Uses of InclusionListExport.ExportFormat in eu.isas.peptideshaker.followup

Methods in eu.isas.peptideshaker.followup that return InclusionListExport.ExportFormat

Modifier and Type	Method and Description
static InclusionListExport.ExportFormat	InclusionListExport.ExportFormat.getTypeFromIndex(int index) Returns the export type corresponding to a given index.
static InclusionListExport.ExportFormat	InclusionListExport.ExportFormat.valueOf(String name) Returns the enum constant of this type with the specified name.
static InclusionListExport.ExportFormat[]	InclusionListExport.ExportFormat.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in eu.isas.peptideshaker.followup with parameters of type InclusionListExport.ExportFormat

Modifier and Type	Method and Description
static void	InclusionListExport.exportInclusionList(File destinationFile, com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, ArrayList<Integer> proteinFilters, ArrayList<InclusionListExport.PeptideFilterType> peptideFilters, InclusionListExport.ExportFormat exportFormat, com.compomics.util.parameters.identification.search.SearchParameters searchParameters, double rtWindow, com.compomics.util.waiting.WaitingHandler waitingHandler, com.compomics.util.gui.filtering.FilterParameters filterPreferences) Writes an inclusion list based on the validated PSMs of the validated peptides of the validated proteins.
static File	InclusionListExport.ExportFormat.verifyFileExtension(File destinationFile, InclusionListExport.ExportFormat exportFormat) Verifies that the file extension is chosen according to the manufacturers specification and adds the extension if missing.

Uses of InclusionListExport.ExportFormat in eu.isas.peptideshaker.gui.export

Constructors in eu.isas.peptideshaker.gui.export with parameters of type InclusionListExport.ExportFormat

Constructor and Description
InclusionListExportDialog(FollowUpExportDialog followupPreferencesDialog, InclusionListExport.ExportFormat exportFormat, boolean modal) Creates a new InclusionListExportDialog.