| Package | Description |
|---|---|
| eu.isas.peptideshaker.followup |
Export for follow-up analysis.
|
| Modifier and Type | Method and Description |
|---|---|
static InclusionListExport.PeptideFilterType |
InclusionListExport.PeptideFilterType.getTypeFromIndex(int index)
Returns the parameter type corresponding to a given index.
|
static InclusionListExport.PeptideFilterType |
InclusionListExport.PeptideFilterType.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static InclusionListExport.PeptideFilterType[] |
InclusionListExport.PeptideFilterType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
InclusionListExport.exportInclusionList(File destinationFile,
com.compomics.util.experiment.identification.Identification identification,
com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator,
com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider,
ArrayList<Integer> proteinFilters,
ArrayList<InclusionListExport.PeptideFilterType> peptideFilters,
InclusionListExport.ExportFormat exportFormat,
com.compomics.util.parameters.identification.search.SearchParameters searchParameters,
double rtWindow,
com.compomics.util.waiting.WaitingHandler waitingHandler,
com.compomics.util.gui.filtering.FilterParameters filterPreferences)
Writes an inclusion list based on the validated PSMs of the validated
peptides of the validated proteins.
|
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