Uses of Class
eu.isas.peptideshaker.followup.InclusionListExport.PeptideFilterType

Packages that use InclusionListExport.PeptideFilterType

Package	Description
eu.isas.peptideshaker.followup	Export for follow-up analysis.

Uses of InclusionListExport.PeptideFilterType in eu.isas.peptideshaker.followup

Methods in eu.isas.peptideshaker.followup that return InclusionListExport.PeptideFilterType

Modifier and Type	Method and Description
static InclusionListExport.PeptideFilterType	InclusionListExport.PeptideFilterType.getTypeFromIndex(int index) Returns the parameter type corresponding to a given index.
static InclusionListExport.PeptideFilterType	InclusionListExport.PeptideFilterType.valueOf(String name) Returns the enum constant of this type with the specified name.
static InclusionListExport.PeptideFilterType[]	InclusionListExport.PeptideFilterType.values() Returns an array containing the constants of this enum type, in the order they are declared.

Method parameters in eu.isas.peptideshaker.followup with type arguments of type InclusionListExport.PeptideFilterType

Modifier and Type

Method and Description

static void

InclusionListExport.exportInclusionList(File destinationFile, com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, ArrayList<Integer> proteinFilters, ArrayList<InclusionListExport.PeptideFilterType> peptideFilters, InclusionListExport.ExportFormat exportFormat, com.compomics.util.parameters.identification.search.SearchParameters searchParameters, double rtWindow, com.compomics.util.waiting.WaitingHandler waitingHandler, com.compomics.util.gui.filtering.FilterParameters filterPreferences) Writes an inclusion list based on the validated PSMs of the validated peptides of the validated proteins.