Uses of Class
eu.isas.peptideshaker.followup.ProgenesisExport.ExportType

Packages that use ProgenesisExport.ExportType

Package	Description
eu.isas.peptideshaker.followup	Export for follow-up analysis.

Uses of ProgenesisExport.ExportType in eu.isas.peptideshaker.followup

Methods in eu.isas.peptideshaker.followup that return ProgenesisExport.ExportType

Modifier and Type	Method and Description
static ProgenesisExport.ExportType	ProgenesisExport.ExportType.getTypeFromIndex(int index) Returns the export type corresponding to a given index.
static ProgenesisExport.ExportType	ProgenesisExport.ExportType.valueOf(String name) Returns the enum constant of this type with the specified name.
static ProgenesisExport.ExportType[]	ProgenesisExport.ExportType.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in eu.isas.peptideshaker.followup with parameters of type ProgenesisExport.ExportType

Modifier and Type

Method and Description

static void

ProgenesisExport.writeProgenesisExport(File destinationFile, com.compomics.util.experiment.io.biology.protein.SequenceProvider sequenceProvider, com.compomics.util.experiment.io.biology.protein.ProteinDetailsProvider proteinDetailsProvider, com.compomics.util.experiment.identification.Identification identification, ProgenesisExport.ExportType exportType, com.compomics.util.waiting.WaitingHandler waitingHandler, HashSet<String> targetedModifications, com.compomics.util.parameters.identification.advanced.SequenceMatchingParameters sequenceMatchingPreferences) Writes a file containing the PSMs in a Progenesis compatible format.