Uses of Package
eu.isas.peptideshaker.preferences

Packages that use eu.isas.peptideshaker.preferences

Package	Description
eu.isas.peptideshaker	PeptideShaker main calculations and jar wrapper.
eu.isas.peptideshaker.cmd	Command line usage.
eu.isas.peptideshaker.export	Exporting data from PeptideShaker.
eu.isas.peptideshaker.export.sections	Export sections.
eu.isas.peptideshaker.fileimport	Import of search results.
eu.isas.peptideshaker.gui	GUI dialogs and helper classes.
eu.isas.peptideshaker.gui.parameters	Preferences dialogs.
eu.isas.peptideshaker.parameters	Parameter settings.
eu.isas.peptideshaker.preferences	Preferences settings.
eu.isas.peptideshaker.utils	Various utilities classes.

Classes in eu.isas.peptideshaker.preferences used by eu.isas.peptideshaker

Class and Description
ProjectDetails This class contains the details about a project.

Classes in eu.isas.peptideshaker.preferences used by eu.isas.peptideshaker.cmd

Class and Description
ProjectDetails This class contains the details about a project.
UserPreferencesParent Implementing this class will give you access to the saved user preferences.

Classes in eu.isas.peptideshaker.preferences used by eu.isas.peptideshaker.export

Class and Description
DisplayParameters This class contains the display preferences for the current project.
ProjectDetails This class contains the details about a project.

Classes in eu.isas.peptideshaker.preferences used by eu.isas.peptideshaker.export.sections

Class and Description
ProjectDetails This class contains the details about a project.

Classes in eu.isas.peptideshaker.preferences used by eu.isas.peptideshaker.fileimport

Class and Description
ProjectDetails This class contains the details about a project.

Classes in eu.isas.peptideshaker.preferences used by eu.isas.peptideshaker.gui

Class and Description
DisplayParameters This class contains the display preferences for the current project.
ProjectDetails This class contains the details about a project.
UserParameters In this class are stored the user preferences for PeptideShaker.

Classes in eu.isas.peptideshaker.preferences used by eu.isas.peptideshaker.gui.parameters

Class and Description
DisplayParameters This class contains the display preferences for the current project.

Classes in eu.isas.peptideshaker.preferences used by eu.isas.peptideshaker.parameters

Class and Description
DisplayParameters This class contains the display preferences for the current project.
ProjectDetails This class contains the details about a project.

Classes in eu.isas.peptideshaker.preferences used by eu.isas.peptideshaker.preferences

Class and Description
PeptideShakerPathParameters.PeptideShakerPathKey Enum of the paths which can be set in PeptideShaker.
UserParameters In this class are stored the user preferences for PeptideShaker.

Classes in eu.isas.peptideshaker.preferences used by eu.isas.peptideshaker.utils

Class and Description
DisplayParameters This class contains the display preferences for the current project.
ProjectDetails This class contains the details about a project.
UserParameters In this class are stored the user preferences for PeptideShaker.
UserPreferencesParent Implementing this class will give you access to the saved user preferences.