| Constructor and Description |
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PsmProcessorRunnable(ConcurrentLinkedQueue<Long> spectrumMatchKeysIterator,
com.compomics.util.experiment.identification.Identification identification,
com.compomics.util.parameters.identification.IdentificationParameters identificationParameters,
InputMap inputMap,
MatchesValidator matchesValidator,
ModificationLocalizationScorer modificationLocalizationScorer,
com.compomics.util.experiment.io.biology.protein.SequenceProvider sequenceProvider,
com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider,
com.compomics.util.experiment.biology.modifications.ModificationProvider modificationProvider,
HashMap<String,Integer> proteinCount,
com.compomics.util.waiting.WaitingHandler waitingHandler,
com.compomics.util.exceptions.ExceptionHandler exceptionHandler)
Constructor.
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public PsmProcessorRunnable(ConcurrentLinkedQueue<Long> spectrumMatchKeysIterator, com.compomics.util.experiment.identification.Identification identification, com.compomics.util.parameters.identification.IdentificationParameters identificationParameters, InputMap inputMap, MatchesValidator matchesValidator, ModificationLocalizationScorer modificationLocalizationScorer, com.compomics.util.experiment.io.biology.protein.SequenceProvider sequenceProvider, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, com.compomics.util.experiment.biology.modifications.ModificationProvider modificationProvider, HashMap<String,Integer> proteinCount, com.compomics.util.waiting.WaitingHandler waitingHandler, com.compomics.util.exceptions.ExceptionHandler exceptionHandler)
spectrumMatchKeysIterator - Iterator for the spectrum match keys.identification - The identification object.identificationParameters - The identification parameters.inputMap - The input map.matchesValidator - The matches validator.modificationLocalizationScorer - The post-translational modification
localization scorer.sequenceProvider - The protein sequences provider.spectrumProvider - The spectrum provider.modificationProvider - The modification provider to use.proteinCount - The protein count.waitingHandler - The waiting handler.exceptionHandler - The exception handler.Copyright © 2021. All rights reserved.