eu.isas.peptideshaker.protein_inference

Enum ProteinInference.GroupSimplificationOption

java.lang.Object

java.lang.Enum<ProteinInference.GroupSimplificationOption>

eu.isas.peptideshaker.protein_inference.ProteinInference.GroupSimplificationOption

All Implemented Interfaces:

Serializable, Comparable<ProteinInference.GroupSimplificationOption>

Enclosing class:

ProteinInference

public static enum ProteinInference.GroupSimplificationOption
extends Enum<ProteinInference.GroupSimplificationOption>

Enum Constant Summary

Enum Constants

Enum Constant and Description
lowerConfidence Group supported by low confidence peptides.
lowerEvidence Group supported by predicted or uncertain proteins.
nonEnzymatic Group supported by non-enzymatic shared peptide.
simplerGroups Group explained by simpler groups.
variant Group supported by peptide shared with protein with variant.

Field Summary

Fields

Modifier and Type	Field and Description
String	description The description to write in the report.
int	index The index of the option.

Method Summary

Modifier and Type	Method and Description
static ProteinInference.GroupSimplificationOption	valueOf(String name) Returns the enum constant of this type with the specified name.
static ProteinInference.GroupSimplificationOption[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

lowerEvidence

public static final ProteinInference.GroupSimplificationOption lowerEvidence

Group supported by predicted or uncertain proteins.

lowerConfidence

public static final ProteinInference.GroupSimplificationOption lowerConfidence

Group supported by low confidence peptides.

nonEnzymatic

public static final ProteinInference.GroupSimplificationOption nonEnzymatic

Group supported by non-enzymatic shared peptide.

variant

public static final ProteinInference.GroupSimplificationOption variant

Group supported by peptide shared with protein with variant.

simplerGroups

public static final ProteinInference.GroupSimplificationOption simplerGroups

Group explained by simpler groups.

Field Detail

index

public final int index

The index of the option.

description

public final String description

The description to write in the report.

Method Detail

values

public static ProteinInference.GroupSimplificationOption[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (ProteinInference.GroupSimplificationOption c : ProteinInference.GroupSimplificationOption.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static ProteinInference.GroupSimplificationOption valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null