public class Ms2PipUtils extends Object
| Constructor and Description |
|---|
Ms2PipUtils() |
| Modifier and Type | Method and Description |
|---|---|
static String |
getPeptideData(com.compomics.util.experiment.identification.spectrum_assumptions.PeptideAssumption peptideAssumption,
com.compomics.util.parameters.identification.search.ModificationParameters modificationParameters,
com.compomics.util.experiment.io.biology.protein.SequenceProvider sequenceProvider,
com.compomics.util.parameters.identification.advanced.SequenceMatchingParameters sequenceMatchingParameters,
com.compomics.util.experiment.biology.modifications.ModificationFactory modificationFactory)
Gets the peptide data to provide to ms2pip.
|
static long |
getPeptideKey(String peptideData)
Returns a unique key corresponding to the given peptide.
|
public static String getPeptideData(com.compomics.util.experiment.identification.spectrum_assumptions.PeptideAssumption peptideAssumption, com.compomics.util.parameters.identification.search.ModificationParameters modificationParameters, com.compomics.util.experiment.io.biology.protein.SequenceProvider sequenceProvider, com.compomics.util.parameters.identification.advanced.SequenceMatchingParameters sequenceMatchingParameters, com.compomics.util.experiment.biology.modifications.ModificationFactory modificationFactory)
peptideAssumption - The peptide assumption.modificationParameters - The modification parameters of the search.sequenceMatchingParameters - The sequence matching parameters.sequenceProvider - The sequence provider.modificationFactory - The factory containing the modification detailspublic static long getPeptideKey(String peptideData)
peptideData - The peptide data as string.Copyright © 2021. All rights reserved.