Uses of Class
eu.isas.peptideshaker.utils.DisplayFeaturesGenerator

Packages that use DisplayFeaturesGenerator

Package	Description
eu.isas.peptideshaker.gui	GUI dialogs and helper classes.
eu.isas.peptideshaker.gui.tablemodels	Table models.

Uses of DisplayFeaturesGenerator in eu.isas.peptideshaker.gui

Methods in eu.isas.peptideshaker.gui that return DisplayFeaturesGenerator

Modifier and Type	Method and Description
DisplayFeaturesGenerator	PeptideShakerGUI.getDisplayFeaturesGenerator() Returns the display features generator.

Uses of DisplayFeaturesGenerator in eu.isas.peptideshaker.gui.tablemodels

Methods in eu.isas.peptideshaker.gui.tablemodels with parameters of type DisplayFeaturesGenerator

Modifier and Type	Method and Description
void	PsmTableModel.updateDataModel(com.compomics.util.experiment.identification.Identification identification, DisplayFeaturesGenerator displayFeaturesGenerator, com.compomics.util.parameters.identification.IdentificationParameters identificationParameters, long[] psmKeys) Update the data in the table model without having to reset the whole table model.
void	PeptideTableModel.updateDataModel(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, DisplayFeaturesGenerator displayFeaturesGenerator, String proteinAccession, long[] peptideKeys) Update the data in the table model without having to reset the whole table model.
void	ProteinTableModel.updateDataModel(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, com.compomics.util.experiment.io.biology.protein.ProteinDetailsProvider proteinDetailsProvider, com.compomics.util.experiment.io.biology.protein.SequenceProvider sequenceProvider, com.compomics.util.experiment.biology.genes.GeneMaps geneMaps, DisplayFeaturesGenerator displayFeaturesGenerator, long[] proteinKeys) Update the data in the table model without having to reset the whole table model.

Constructors in eu.isas.peptideshaker.gui.tablemodels with parameters of type DisplayFeaturesGenerator

Constructor and Description
PeptideFractionTableModel(com.compomics.util.experiment.identification.Identification identification, DisplayFeaturesGenerator displayFeaturesGenerator, ArrayList<Long> peptideKeys, ArrayList<String> fileNames) Constructor which sets a new table.
PeptideTableModel(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, DisplayFeaturesGenerator displayFeaturesGenerator, String proteinAccession, long[] peptideKeys, boolean displayScores, com.compomics.util.exceptions.ExceptionHandler exceptionHandler) Constructor which sets a new table.
ProteinGoTableModel(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.io.biology.protein.ProteinDetailsProvider proteinDetailsProvider, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, DisplayFeaturesGenerator displayFeaturesGenerator, ArrayList<Long> proteinGroupKeys, boolean showScores) Constructor which sets a new table.
ProteinTableModel(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, com.compomics.util.experiment.io.biology.protein.ProteinDetailsProvider proteinDetailsProvider, com.compomics.util.experiment.io.biology.protein.SequenceProvider sequenceProvider, com.compomics.util.experiment.biology.genes.GeneMaps geneMaps, DisplayFeaturesGenerator displayFeaturesGenerator, com.compomics.util.exceptions.ExceptionHandler exceptionHandler, long[] proteinKeys) Constructor.
PsmTableModel(com.compomics.util.experiment.identification.Identification identification, DisplayFeaturesGenerator displayFeaturesGenerator, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, com.compomics.util.parameters.identification.IdentificationParameters identificationParameters, long[] psmKeys, boolean displayScores, com.compomics.util.exceptions.ExceptionHandler exceptionHandler) Constructor which sets a new table.