PeptideShaker

interpretation of proteomics identifications from multiple search engines

PeptideShaker is divided into nine tabs covering different aspects of the analysis:

For how to use PeptideShaker please see our Bioinformatics for Proteomics Tutorials.

At the PeptideShaker home page you will also find a Troubleshooting section dealing with known issues related to the startup and use of the tool.

If you find any bugs or have any questions please contact the developers. Information on how to do this can be found on the PeptideShaker home page.

PeptideShaker home page: http://compomics.github.io/projects/peptide-shaker.html.

Please cite PeptideShaker as: Vaudel et al.: Nature Biotechnol. 2015 Jan;33(1):22-24.