New Project

Introduction

The New Project dialog is where new PeptideShaker projects are created based on identification files. After completing each field click "Load Data!" to start the processing. During the importing of the files the progress of the import will be displayed.

To open previously saved projects use the Open Project option instead.


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Project Details

The project details will be used to reference the project. It is possible to set the project name, the type of sample and the number of the replicates. The project annotation is mainly there to help you annotate the project with the information you find important for later re-use of the project.


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Input Files

PeptideShaker requires information found in three different types of files:


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Processing Parameters

Additional settings can be set for the preprocessing of the identification files:

If the identification files were generated using SearchGUI, PeptideShaker will load the search parameters automatically!

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