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## Package org.ensembl.variation.datamodel

Data types that are unique to ensembl variation databases such as Variation, Allele and Genotype.

See:
Description

Interface Summary
Allele | A single allele of a nucleotide variation.
AlleleConsequenceAdaptor | Adaptor for retrievning and computing AlleleConsequences.
AlleleFeature | An allele located on a genome.
AlleleGroup | Ensembl representation of a grouping of alleles (aka haplotype).
Genotype | Genotype.
Individual | This is a class representing a single individual.
IndividualGenotype | The genotype of a single diploid individual at a specific locus.
LDFeature | A linkage disequilibrium between two VariationFeatures.
Population | A group of individuals.
PopulationGenotype | A genotype that is present in a population.
TranscriptVariation | A TranscriptVariation object represents a variation feature which is in close proximity to an Ensembl transcript.
Variation | A nucleotide variation such as a SNP.
VariationFeature | This is a an occurrence of a nucleotide variation in the genome.
VariationGroup | Grouping of variations (aka haplotype set).
VariationGroupFeature | The point of this class is....

Class Summary
AlleleConsequence | Represents part or all of the effect of a single allele on a transcript.
LDFeatureContainer | A container for LDFeatures (linkage disequilibrium features) that provides various methods for filtering and accessing the the contained data.
ValidationState | Possible Validation states of a Variation.

## Package org.ensembl.variation.datamodel Description

Data types that are unique to ensembl variation databases such as Variation, Allele and Genotype.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
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