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## Uses of Interface
org.ensembl.datamodel.Transcript

Packages that use Transcript
org.ensembl.datamodel | Data types that appear in the core ensembl databases such as Genes, Exons and Karyotypes and various support classes such as Location.
org.ensembl.driver | Driver and adaptors for accessing ensembl core databases.
org.ensembl.variation.datamodel | Data types that are unique to ensembl variation databases such as Variation, Allele and Genotype.
org.ensembl.variation.driver | Driver and adaptors for accessing ensembl variation databases.

Uses of Transcript in org.ensembl.datamodel

Methods in org.ensembl.datamodel that return Transcript
`Transcript` | `Translation.getTranscript()`

Methods in org.ensembl.datamodel with parameters of type Transcript
`void` | `Translation.setTranscript(Transcript transcript)`
`void` | `Exon.addTranscript(Transcript t)`

Constructors in org.ensembl.datamodel with parameters of type Transcript
`TranscriptAlleleHelper(Transcript transcript)` Denormalise relevant information from transcript.

Uses of Transcript in org.ensembl.driver

Methods in org.ensembl.driver that return Transcript
`Transcript` | `TranscriptAdaptor.fetch(long internalID)`
`Transcript` | `TranscriptAdaptor.fetch(java.lang.String accessionID)`
`Transcript` | `TranscriptAdaptor.fetchComplete(Transcript transcript)` Loads missing gene and exons into the transcript where these are available in the database.

Methods in org.ensembl.driver with parameters of type Transcript
`void` | `TranscriptAdaptor.store(Transcript transcript)` Stores transcript plus it's exons and translation in persistent storage.
`void` | `TranscriptAdaptor.delete(Transcript transcript)` Deletes transcript plus it's exons and translation from persistent storage.
`Transcript` | `TranscriptAdaptor.fetchComplete(Transcript transcript)` Loads missing gene and exons into the transcript where these are available in the database.
`void` | `TranscriptAdaptor.fetchAccessionID(Transcript transcript)` Retrieves transcript's accession from persistent store and sets transcript.accession.
`void` | `TranscriptAdaptor.fetchVersion(Transcript transcript)` Retrieves transcript's version from persistent store and sets transcript.version.

Uses of Transcript in org.ensembl.variation.datamodel

Methods in org.ensembl.variation.datamodel that return Transcript
`Transcript` | `TranscriptVariation.getTranscript()` Transcript that is affected by this TranscriptVariation.

Methods in org.ensembl.variation.datamodel with parameters of type Transcript
`java.util.List` | `AlleleConsequenceAdaptor.fetch(Transcript transcript, java.util.List alleleFeatures)` Creates the AlleleTranscriptConsequences that result from applying the AlleleFeature to the transcript.
`java.util.List` | `AlleleConsequenceAdaptor.fetch(Transcript transcript)` Return the AlleleConsequences for the transcript.

Uses of Transcript in org.ensembl.variation.driver

Methods in org.ensembl.variation.driver with parameters of type Transcript
`java.util.List` | `TranscriptVariationAdaptor.fetch(Transcript transcript)` Retrieves all TranscriptVariation objects associated with provided transcript.
`java.util.List` | `AlleleFeatureAdaptor.fetch(Transcript transcript, int flankSize)` Return all the AlleleFeatures hitting the transcript and it's 5prime and 3prime flanking regions.

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