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## Hierarchy For Package org.ensembl.datamodel

Package Hierarchies:
  All Packages

## Class Hierarchy

- class java.lang.Object
  - class org.ensembl.datamodel.ChainedAssemblyMapper (implements org.ensembl.datamodel.AssemblyMapper)
  - class org.ensembl.datamodel.CoordinateSystemMapping
  - class org.ensembl.datamodel.Location (implements java.lang.Cloneable, java.lang.Comparable, java.io.Serializable)
    - class org.ensembl.datamodel.AssemblyLocation
    - class org.ensembl.datamodel.CloneFragmentLocation (implements java.lang.Cloneable)
  - class org.ensembl.datamodel.impl.PersistentImpl (implements org.ensembl.datamodel.Persistent)
    - class org.ensembl.datamodel.CoordinateSystem (implements java.lang.Cloneable, java.lang.Comparable)
    - class org.ensembl.datamodel.impl.LocatableImpl (implements java.lang.Cloneable, java.lang.Comparable, org.ensembl.datamodel.Locatable)
      - class org.ensembl.datamodel.impl.BaseFeatureImpl (implements org.ensembl.datamodel.Feature)
        - class org.ensembl.datamodel.AssemblyException
  - class org.ensembl.datamodel.Query (implements java.lang.Cloneable, java.io.Serializable)
  - class org.ensembl.datamodel.SimpleAssemblyMapper (implements org.ensembl.datamodel.AssemblyMapper)
  - class java.lang.Throwable (implements java.io.Serializable)
    - class java.lang.Exception
      - class java.lang.RuntimeException
        - class org.ensembl.datamodel.AttributeException
        - class org.ensembl.datamodel.InvalidLocationException
  - class org.ensembl.datamodel.TranscriptAlleleHelper

## Interface Hierarchy

- interface org.ensembl.datamodel.ArchiveStableID
- interface org.ensembl.datamodel.AssemblyElement
- interface org.ensembl.datamodel.AssemblyMapper
- interface org.ensembl.datamodel.Attribute
- interface java.lang.Cloneable
  - interface org.ensembl.datamodel.Locatable (also extends java.lang.Comparable, org.ensembl.datamodel.Persistent)
    - interface org.ensembl.datamodel.Feature
      - interface org.ensembl.datamodel.Exon (also extends org.ensembl.datamodel.Accessioned)
      - interface org.ensembl.datamodel.FeaturePair
        - interface org.ensembl.datamodel.DnaDnaAlignFeature
        - interface org.ensembl.datamodel.DnaDnaAlignment
        - interface org.ensembl.datamodel.DnaProteinAlignment
        - interface org.ensembl.datamodel.RepeatFeature
      - interface org.ensembl.datamodel.Gene (also extends org.ensembl.datamodel.Accessioned)
      - interface org.ensembl.datamodel.MarkerFeature
      - interface org.ensembl.datamodel.MiscFeature
      - interface org.ensembl.datamodel.OligoFeature
      - interface org.ensembl.datamodel.PredictionExon
      - interface org.ensembl.datamodel.PredictionTranscript
      - interface org.ensembl.datamodel.QtlFeature
      - interface org.ensembl.datamodel.SimpleFeature
      - interface org.ensembl.datamodel.Transcript (also extends org.ensembl.datamodel.Accessioned)
    - interface org.ensembl.datamodel.ProteinFeature
    - interface org.ensembl.datamodel.Sequence
- interface java.lang.Comparable
  - interface org.ensembl.datamodel.Locatable (also extends java.lang.Cloneable, org.ensembl.datamodel.Persistent)
    - interface org.ensembl.datamodel.Feature
      - interface org.ensembl.datamodel.Exon (also extends org.ensembl.datamodel.Accessioned)
      - interface org.ensembl.datamodel.FeaturePair
        - interface org.ensembl.datamodel.DnaDnaAlignFeature
        - interface org.ensembl.datamodel.DnaDnaAlignment
        - interface org.ensembl.datamodel.DnaProteinAlignment
        - interface org.ensembl.datamodel.RepeatFeature
      - interface org.ensembl.datamodel.Gene (also extends org.ensembl.datamodel.Accessioned)
      - interface org.ensembl.datamodel.MarkerFeature
      - interface org.ensembl.datamodel.MiscFeature
      - interface org.ensembl.datamodel.OligoFeature
      - interface org.ensembl.datamodel.PredictionExon
      - interface org.ensembl.datamodel.PredictionTranscript
      - interface org.ensembl.datamodel.QtlFeature
      - interface org.ensembl.datamodel.SimpleFeature
      - interface org.ensembl.datamodel.Transcript (also extends org.ensembl.datamodel.Accessioned)
    - interface org.ensembl.datamodel.ProteinFeature
    - interface org.ensembl.datamodel.Sequence
- interface org.ensembl.datamodel.QtlSynonym
- interface org.ensembl.datamodel.SequenceEdit
- interface java.io.Serializable
  - interface org.ensembl.datamodel.Persistent
    - interface org.ensembl.datamodel.Accessioned
      - interface org.ensembl.datamodel.Exon (also extends org.ensembl.datamodel.Feature)
      - interface org.ensembl.datamodel.Gene (also extends org.ensembl.datamodel.Feature)
      - interface org.ensembl.datamodel.Transcript (also extends org.ensembl.datamodel.Feature)
      - interface org.ensembl.datamodel.Translation
    - interface org.ensembl.datamodel.Analysis
    - interface org.ensembl.datamodel.Chromosome
    - interface org.ensembl.datamodel.ChromosomeBand
    - interface org.ensembl.datamodel.ExternalDatabase
    - interface org.ensembl.datamodel.ExternalRef
    - interface org.ensembl.datamodel.KaryotypeBand
    - interface org.ensembl.datamodel.Locatable (also extends java.lang.Cloneable, java.lang.Comparable)
      - interface org.ensembl.datamodel.Feature
        - interface org.ensembl.datamodel.Exon (also extends org.ensembl.datamodel.Accessioned)
        - interface org.ensembl.datamodel.FeaturePair
          - interface org.ensembl.datamodel.DnaDnaAlignFeature
          - interface org.ensembl.datamodel.DnaDnaAlignment
          - interface org.ensembl.datamodel.DnaProteinAlignment
          - interface org.ensembl.datamodel.RepeatFeature
        - interface org.ensembl.datamodel.Gene (also extends org.ensembl.datamodel.Accessioned)
        - interface org.ensembl.datamodel.MarkerFeature
        - interface org.ensembl.datamodel.MiscFeature
        - interface org.ensembl.datamodel.OligoFeature
        - interface org.ensembl.datamodel.PredictionExon
        - interface org.ensembl.datamodel.PredictionTranscript
        - interface org.ensembl.datamodel.QtlFeature
        - interface org.ensembl.datamodel.SimpleFeature
        - interface org.ensembl.datamodel.Transcript (also extends org.ensembl.datamodel.Accessioned)
      - interface org.ensembl.datamodel.ProteinFeature
      - interface org.ensembl.datamodel.Sequence
    - interface org.ensembl.datamodel.MappingSession
    - interface org.ensembl.datamodel.Marker
    - interface org.ensembl.datamodel.MiscSet
    - interface org.ensembl.datamodel.OligoArray
    - interface org.ensembl.datamodel.OligoProbe
    - interface org.ensembl.datamodel.Population
    - interface org.ensembl.datamodel.Qtl
    - interface org.ensembl.datamodel.RepeatConsensus
    - interface org.ensembl.datamodel.SequenceRegion
    - interface org.ensembl.datamodel.StableIDEvent
  - interface org.ensembl.datamodel.SubmittedVariation
- interface org.ensembl.datamodel.SnapShot
  - interface org.ensembl.datamodel.GeneSnapShot
  - interface org.ensembl.datamodel.TranscriptSnapShot
  - interface org.ensembl.datamodel.TranslationSnapShot
- interface org.ensembl.datamodel.UngappedAlignment

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