Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Interface
org.ensembl.variation.datamodel.Variation

Packages that use Variation
org.ensembl.variation.datamodel | Data types that are unique to ensembl variation databases such as Variation, Allele and Genotype.
org.ensembl.variation.driver | Driver and adaptors for accessing ensembl variation databases.

Uses of Variation in org.ensembl.variation.datamodel

Methods in org.ensembl.variation.datamodel that return Variation
`Variation` | `Genotype.getVariation()` Variation.
`Variation` | `AlleleFeature.getVariation()` Variation this allele belongs to.
`Variation` | `VariationFeature.getVariation()` The variation associated with this feature.

Methods in org.ensembl.variation.datamodel with parameters of type Variation
`void` | `AlleleGroup.addVariation(Variation variation, java.lang.String allele)` Adds an allele and associated variation to this allele group
`void` | `VariationGroup.addVariation(Variation variation)` Add variation to group.
`void` | `VariationFeature.setVariation(Variation variation)`

Uses of Variation in org.ensembl.variation.driver

Methods in org.ensembl.variation.driver that return Variation
`Variation` | `VariationAdaptor.fetch(long internalID)` Fetch variation by internal id.
`Variation` | `VariationAdaptor.fetch(java.lang.String name)` Fetch variation by name.

Methods in org.ensembl.variation.driver with parameters of type Variation
`java.util.List` | `VariationFeatureAdaptor.fetch(Variation variation)` Fetches the VariationFeatures that show where the Variation appears on the genome.
`void` | `VariationAdaptor.fetchFlankingSequence(Variation variation)` Loads flanking sequence for variation.
`java.util.List` | `VariationGroupAdaptor.fetch(Variation variation)` Fetch all variation groups that contain the variation.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES