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## Uses of Interface
org.ensembl.driver.Adaptor

Packages that use Adaptor
org.ensembl.compara.driver | Compara adaptors.
org.ensembl.driver | Driver and adaptors for accessing ensembl core databases.
org.ensembl.variation.datamodel | Data types that are unique to ensembl variation databases such as Variation, Allele and Genotype.
org.ensembl.variation.driver | Driver and adaptors for accessing ensembl variation databases.

Uses of Adaptor in org.ensembl.compara.driver

Subinterfaces of Adaptor in org.ensembl.compara.driver
`interface` | `DnaDnaAlignFeatureAdaptor`
`interface` | `DnaFragmentAdaptor` I am associated with the compara-analyses
`interface` | `GenomeDBAdaptor` I am a part of the compara analysis
`interface` | `GenomicAlignAdaptor` I am a part of the compara analysis
`interface` | `GenomicAlignBlockAdaptor` I am a part of the compara analysis
`interface` | `MemberAdaptor` I am associated with the compara-analyses
`interface` | `MethodLinkAdaptor` I am a part of the compara analysis
`interface` | `MethodLinkSpeciesSetAdaptor` I am a part of the compara analysis

Uses of Adaptor in org.ensembl.driver

Subinterfaces of Adaptor in org.ensembl.driver
`interface` | `AnalysisAdaptor` Provides access to Analyses in the datasource.
`interface` | `AssemblyExceptionAdaptor` Adaptor for retrieving and handling AssemblyExceptions which are used to represent PARs and haplotypes.
`interface` | `AssemblyMapperAdaptor`
`interface` | `CoordinateSystemAdaptor` Provides access to coordinate system and meta data in the datasource(s).
`interface` | `DnaDnaAlignmentAdaptor` Provides access to DnaDnaAlignments in a datasource.
`interface` | `DnaProteinAlignmentAdaptor` Provides access to DnaProteinAlignments in a datasource.
`interface` | `ExonAdaptor` Provides access to Exons in the datasource.
`interface` | `ExternalDatabaseAdaptor` Provides access to ExternalDatabases in the datasource.
`interface` | `ExternalRefAdaptor` Provides access to ExternalRefs in the datasource.
`interface` | `FeatureAdaptor` Provides access to a datatype that is Locatable so can be fetched by location.
`interface` | `GeneAdaptor` Provides access to genes in the datasource.
`interface` | `KaryotypeBandAdaptor`
`interface` | `LocationConverter` Converts locations between different coordinate systems.
`interface` | `LockableGeneAdaptor` When the implementing class overrides store() the intention is that it will succeed only if the gene is locked by the 'current' user and that the lock is released before any other user can modify the gene.
`interface` | `MarkerAdaptor` Provides access to Markers in the datasource.
`interface` | `MiscFeatureAdaptor` Adaptor for retrieving MiscFeatures.
`interface` | `MiscSetAdaptor`
`interface` | `OligoArrayAdaptor` Adaptor for retrieving microarrays.
`interface` | `OligoFeatureAdaptor` Adaptor for retrieving OligoFeatures from a database.
`interface` | `OligoProbeAdaptor` Adaptor for retrieving AffyProbes from the database.
`interface` | `PredictionExonAdaptor`
`interface` | `PredictionTranscriptAdaptor` Provides access to PredictionTranscripts in the datasource.
`interface` | `ProteinFeatureAdaptor` Provides access to ProteinFeatures in the datasource.
`interface` | `QtlAdaptor` Retrieves Qtls from the database.
`interface` | `QtlFeatureAdaptor` Retrieves QtlFeatures from the database.
`interface` | `RepeatConsensusAdaptor` Provides access to RepeatConsensus' in the datasource.
`interface` | `RepeatFeatureAdaptor` Provides access to RepeatFeatures in the datasource.
`interface` | `SequenceAdaptor` Provides access to Sequence in the datasource.
`interface` | `SimpleFeatureAdaptor` Provides access to SimpleFeatures in the datasource.
`interface` | `StableIDEventAdaptor` Provides access to StableIDEvents in the datasource.
`interface` | `SupportingFeatureAdaptor` Provides access to SupportingFeatures in the datasource.
`interface` | `TranscriptAdaptor` Provides access to Transcripts in the datasource.
`interface` | `TranslationAdaptor` Provides access to Translations in the datasource.

Methods in org.ensembl.driver that return Adaptor
`Adaptor` | `EnsemblDriver.getAdaptor(java.lang.String type)`
`Adaptor[]` | `EnsemblDriver.getAdaptors()`
`Adaptor` | `EnsemblDriver.addAdaptor(Adaptor adaptor)` Attempts to connects to the database if not already connected.

Methods in org.ensembl.driver with parameters of type Adaptor
`Adaptor` | `EnsemblDriver.addAdaptor(Adaptor adaptor)` Attempts to connects to the database if not already connected.
`void` | `EnsemblDriver.removeAdaptor(Adaptor adaptor)`

Uses of Adaptor in org.ensembl.variation.datamodel

Subinterfaces of Adaptor in org.ensembl.variation.datamodel
`interface` | `AlleleConsequenceAdaptor` Adaptor for retrievning and computing AlleleConsequences.

Uses of Adaptor in org.ensembl.variation.driver

Subinterfaces of Adaptor in org.ensembl.variation.driver
`interface` | `AlleleFeatureAdaptor` Used to retrieve AlleleFeatures.
`interface` | `AlleleGroupAdaptor` Retrieves Allele groups from an ensembl database.
`interface` | `IndividualAdaptor` This adaptor provides database connectivity for Individual objects.
`interface` | `IndividualGenotypeAdaptor` This adaptor provides database connectivity for IndividualGenotype objects.
`interface` | `LDFeatureAdaptor` Provides database access for retrieving LDFeatures as either a simple List or wrapped in an optimised LDFeaturesContainer.
`interface` | `PopulationAdaptor` Adaptor for retrieving variation populations.
`interface` | `PopulationGenotypeAdaptor` This adaptor provides database connectivity for PopulationGenotype objects.
`interface` | `TranscriptVariationAdaptor` This adaptor provides database connectivity for TranscriptVariation objects.
`interface` | `VariationAdaptor` The point of this class is ...
`interface` | `VariationFeatureAdaptor` Adaptor for retrieving VariationFeatures.
`interface` | `VariationGroupAdaptor` Retrieves Variation groups from an ensembl database.
`interface` | `VariationGroupFeatureAdaptor` This adaptor provides database connectivity for VariationGroupFeature objects.

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