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## Uses of Interface
org.ensembl.datamodel.Sequence

Packages that use Sequence
org.ensembl.datamodel | Data types that appear in the core ensembl databases such as Genes, Exons and Karyotypes and various support classes such as Location.
org.ensembl.driver | Driver and adaptors for accessing ensembl core databases.

Uses of Sequence in org.ensembl.datamodel

Methods in org.ensembl.datamodel that return Sequence
`Sequence` | `Translation.getSequence()` Concatenatation of all exon sequences excluding the UTRs.
`Sequence` | `FeaturePair.getHitSequence()`
`Sequence` | `Locatable.getSequence()` Sequence at this genomic location.
`Sequence` | `RepeatConsensus.getSequence()` This is not available in old databases, null is returned in such a case.
`Sequence` | `Transcript.getSequence()`
`Sequence` | `Sequence.subSequence(int relativeStart, int relativeEnd)`

Methods in org.ensembl.datamodel with parameters of type Sequence
`void` | `Gene.setSequence(Sequence sequence)`
`void` | `Translation.setSequence(Sequence sequence)`
`void` | `FeaturePair.setHitSequence(Sequence hitSequence)`
`void` | `Exon.setSequence(Sequence sequence)`
`void` | `Locatable.setSequence(Sequence sequence)`
`void` | `RepeatConsensus.setSequence(Sequence sequence)`
`void` | `Transcript.setSequence(Sequence sequence)`

Uses of Sequence in org.ensembl.driver

Methods in org.ensembl.driver that return Sequence
`Sequence` | `SequenceAdaptor.fetch(Location location)` Fetches sequence corresponding to location.
`Sequence` | `SequenceAdaptor.fetch(long internalID)`

Methods in org.ensembl.driver with parameters of type Sequence
`void` | `SequenceAdaptor.delete(Sequence sequence)`
`long` | `SequenceAdaptor.store(Sequence sequence)` Store the Sequence in data source.

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