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## Uses of Package
org.ensembl.driver

Packages that use org.ensembl.driver
org.ensembl | Java library for accessing Ensembl core, compara and variation (SNP) databases.
org.ensembl.compara.driver | Compara adaptors.
org.ensembl.datamodel | Data types that appear in the core ensembl databases such as Genes, Exons and Karyotypes and various support classes such as Location.
org.ensembl.driver | Driver and adaptors for accessing ensembl core databases.
org.ensembl.registry | The Registry makes it easy to access to multiple ensembl databases.
org.ensembl.util | Utility classes.
org.ensembl.variation.datamodel | Data types that are unique to ensembl variation databases such as Variation, Allele and Genotype.
org.ensembl.variation.driver | Driver and adaptors for accessing ensembl variation databases.

Classes in org.ensembl.driver used by org.ensembl
AdaptorException Thrown when a problem occurs running code in ensj.
ConfigurationException Thrown when an illegal configuration is used.

Classes in org.ensembl.driver used by org.ensembl.compara.driver
Adaptor Provides access to some datatype in some datasource.
AdaptorException Thrown when a problem occurs running code in ensj.
EnsemblDriver An ensembl driver provides access to an ensembl database through it's adaptors.

Classes in org.ensembl.driver used by org.ensembl.datamodel
AdaptorException Thrown when a problem occurs running code in ensj.
CoreDriver Provides adaptors for accessing to ensembl core databases.
LocationConverter Converts locations between different coordinate systems.

Classes in org.ensembl.driver used by org.ensembl.driver
Adaptor Provides access to some datatype in some datasource.
AdaptorException Thrown when a problem occurs running code in ensj.
AnalysisAdaptor Provides access to Analyses in the datasource.
AssemblyExceptionAdaptor Adaptor for retrieving and handling AssemblyExceptions which are used to represent PARs and haplotypes.
AssemblyMapperAdaptor
ConfigurationException Thrown when an illegal configuration is used.
CoordinateSystemAdaptor Provides access to coordinate system and meta data in the datasource(s).
CoreDriver Provides adaptors for accessing to ensembl core databases.
DnaDnaAlignmentAdaptor Provides access to DnaDnaAlignments in a datasource.
DnaProteinAlignmentAdaptor Provides access to DnaProteinAlignments in a datasource.
EnsemblDriver An ensembl driver provides access to an ensembl database through it's adaptors.
ExonAdaptor Provides access to Exons in the datasource.
ExternalDatabaseAdaptor Provides access to ExternalDatabases in the datasource.
ExternalRefAdaptor Provides access to ExternalRefs in the datasource.
FeatureAdaptor Provides access to a datatype that is Locatable so can be fetched by location.
GeneAdaptor Provides access to genes in the datasource.
KaryotypeBandAdaptor
LocationConverter Converts locations between different coordinate systems.
MarkerAdaptor Provides access to Markers in the datasource.
MarkerFeatureAdaptor
MiscFeatureAdaptor Adaptor for retrieving MiscFeatures.
MiscSetAdaptor
OligoArrayAdaptor Adaptor for retrieving microarrays.
OligoFeatureAdaptor Adaptor for retrieving OligoFeatures from a database.
OligoProbeAdaptor Adaptor for retrieving AffyProbes from the database.
PredictionExonAdaptor
PredictionTranscriptAdaptor Provides access to PredictionTranscripts in the datasource.
ProteinFeatureAdaptor Provides access to ProteinFeatures in the datasource.
QtlAdaptor Retrieves Qtls from the database.
QtlFeatureAdaptor Retrieves QtlFeatures from the database.
RepeatConsensusAdaptor Provides access to RepeatConsensus' in the datasource.
RepeatFeatureAdaptor Provides access to RepeatFeatures in the datasource.
SequenceAdaptor Provides access to Sequence in the datasource.
SequenceRegionAdaptor Adaptor for SequenceRegion objects.
ServerDriver Driver providing access to an ensembl database server.
ServerDriverFactory Factory for producing, or retrieving from a cached, ServerDrivers.
SimpleFeatureAdaptor Provides access to SimpleFeatures in the datasource.
StableIDEventAdaptor Provides access to StableIDEvents in the datasource.
SupportingFeatureAdaptor Provides access to SupportingFeatures in the datasource.
TranscriptAdaptor Provides access to Transcripts in the datasource.
TranslationAdaptor Provides access to Translations in the datasource.

Classes in org.ensembl.driver used by org.ensembl.registry
AdaptorException Thrown when a problem occurs running code in ensj.
ConfigurationException Thrown when an illegal configuration is used.
CoreDriver Provides adaptors for accessing to ensembl core databases.
ServerDriverFactory Factory for producing, or retrieving from a cached, ServerDrivers.

Classes in org.ensembl.driver used by org.ensembl.util
AdaptorException Thrown when a problem occurs running code in ensj.

Classes in org.ensembl.driver used by org.ensembl.variation.datamodel
Adaptor Provides access to some datatype in some datasource.
AdaptorException Thrown when a problem occurs running code in ensj.

Classes in org.ensembl.driver used by org.ensembl.variation.driver
Adaptor Provides access to some datatype in some datasource.
AdaptorException Thrown when a problem occurs running code in ensj.
CoreDriver Provides adaptors for accessing to ensembl core databases.
EnsemblDriver An ensembl driver provides access to an ensembl database through it's adaptors.
FeatureAdaptor Provides access to a datatype that is Locatable so can be fetched by location.

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