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## org.ensembl.variation.driver
Interface AlleleFeatureAdaptor

All Superinterfaces:
  Adaptor, java.rmi.Remote

public interface AlleleFeatureAdaptor
extends Adaptor

Used to retrieve AlleleFeatures.

Author:
  Craig Melsopp

Field Summary
`static java.lang.String` | `TYPE`

Method Summary
`java.util.List` | `fetch(Location location)` Return AlleleFeatures overlapping the location.
`java.util.List` | `fetch(Transcript transcript, int flankSize)` Return all the AlleleFeatures hitting the transcript and it's 5prime and 3prime flanking regions.

Methods inherited from interface org.ensembl.driver.Adaptor
`clearCache, closeAllConnections, getType`

Field Detail

### TYPE

    public static final java.lang.String TYPE

See Also:
  Constant Field Values

Method Detail

### fetch

    public java.util.List fetch(Location location)
                         throws AdaptorException

  Return AlleleFeatures overlapping the location.

  Parameters:
    `location` - location filter.
  Returns:
    zero or more AlleleFeatures overlapping the location.
  Throws:
    `AdaptorException`

### fetch

    public java.util.List fetch(Transcript transcript,
                                int flankSize)
                         throws AdaptorException

  Return all the AlleleFeatures hitting the transcript and it's 5prime and 3prime flanking regions. We use the transcripts location as defined by the start of it's first exon to the end of it's last exon (including introns).

  Parameters:
    `transcript` - transcript of interest.
    `flankSize` - flanking region size.
  Returns:
    zero or more AlleleFeatures hitting the transcript or it's flanking regions.
  Throws:
    `AdaptorException`

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