Proj_ID Title Species Publication date Submission type Tissues PXD000089 Proteomic and phosphoproteomic data of colorectal cancer tissues and cells for Chromosome-Centric Human Proteome Project Homo sapiens (Human) 2013-01-11 PARTIAL colorectal cancer tissues PXD000474 Simulated phosphopeptide spectral library for confident site localization Homo sapiens (Human) 2015-03-17 PARTIAL HeLa cell PXD000612 Ultra-deep human phosphoproteome reveals different regulatory nature of Tyr and Ser/Thr-based signaling Homo sapiens (Human) 2014-08-06 PARTIAL cell culture PXD000836 HOPE-fixation of lung tissue allows retrospective proteome and phosphoproteome studies Homo sapiens (Human) 2014-05-22 PARTIAL lung PXD001060 Fe-IMAC column based phospho enrichment Homo sapiens (Human) 2015-08-19 PARTIAL Epithelial cell PXD001170 AML_profiling Homo sapiens (Human) 2017-02-16 PARTIAL blood PXD001333 Anion-Exchange Chromatography of Tryptic and Phosphopeptides: WAX vs. SAX and AEX vs. ERLIC Homo sapiens (Human) 2015-04-23 PARTIAL HeLa cell PXD001374 Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergistic RAS and CIP2A signaling Homo sapiens (Human) 2015-08-24 PARTIAL HeLa cell PXD001546 Reproducibility of label-free single-shot phosphoproteomics applied to CRC cell lines Homo sapiens (Human) 2015-04-15 PARTIAL cell culture PXD001550 Human CRC cell line baseline phosphoproteomics Homo sapiens (Human) 2015-04-15 PARTIAL cell culture PXD001565 Evaluation of phospho-tyrosine antibodies for label-free phosphoproteomics Homo sapiens (Human) 2015-12-09 PARTIAL colon,brain PXD002255 Enrichment strategy for searching missing protein Homo sapiens (Human) 2015-07-14 COMPLETE cell culture,blood serum PXD002286 Phospo-proteomic profiling of Castration Resistant Prostate Cancer Homo sapiens (Human) 2016-08-19 PARTIAL - PXD002394 Proteomic and phosphoproteomic analysis of cisplatin resistance in patient derived serous ovarian cancer Homo sapiens (Human) 2017-05-02 PARTIAL cell suspension culture PXD002646 A systematic evaluation of nanocast metal oxide microspheres for phosphoproteomics applications Homo sapiens (Human) 2017-05-17 PARTIAL HEK293 PXD002990 Complementary Phosphoproteomic Approaches Link IL-23R Downstream Signaling with Metabolic Adaptation in Lymphocytes Homo sapiens (Human) 2016-04-21 COMPLETE lymph node PXD003198 Characterisation of pancreatic ductal adenocarcinoma subtypes by global phosphotyrosine profiling Homo sapiens (Human) 2016-06-09 PARTIAL pancreatic cell line PXD003531 Proteomics of Primary cells derived from Ovarian Cancer Homo sapiens (Human) 2017-04-03 PARTIAL primary cell PXD004252 Modulating the selectivity of affinity absorbents to multi-phosphopeptides by a novel competitive substitution strategy Homo sapiens (Human) 2016-08-03 PARTIAL cell culture PXD004415 Quantitative phosphoproteome analysis of cisplatin-induced apoptosis in Jurkat T cells Homo sapiens (Human) 2017-05-11 COMPLETE T lymphocyte PXD004447 Mirroring the charged termini; ETD/HCD fragmentation characteristics of LysargiNase and tryptic peptides and their benefits for peptide sequencing in proteomics Homo sapiens (Human) 2016-12-02 PARTIAL cell culture PXD004452 HeLa proteome of 12,250 protein-coding genes Homo sapiens (Human) 2017-06-12 PARTIAL liver,colon PXD004940 Performance of the Orbitrap Fusion Lumos Tribrid in single-shot analyses of human samples Homo sapiens (Human) 2017-03-09 PARTIAL HeLa cell PXD005366 Robust, sensitive and automated phosphopeptide enrichment optimized for low sample amounts applied to primary hippocampal neurons Homo sapiens (Human),Rattus norvegicus (Rat) 2016-12-14 PARTIAL cell culture PXD006482 Identification of Missing Proteins in the Phosphoproteome of Kidney Cancer Homo sapiens (Human) 2017-09-01 COMPLETE kidney PXD006114 Phosphoproteomics of in vivo resistance to EGFR-targeted therapy in lung cancer cells Homo sapiens (Human) 2017-08-28 COMPLETE Epithelial cell, cell culture PXD003215 A Novel Method for Isolating Whole Protein from Human Cranial Bone Homo sapiens (Human) 2016-10-05 COMPLETE Osteocyte,Cranium,Osteoblast PXD003657 Antibody-independent identification of bovine milk-derived peptides in breast-milk Homo sapiens (Human) 2016-07-19 COMPLETE Milk samples PXD003660 Early Signaling Dynamics of EGFR Homo sapiens (Human) 2016-06-24 COMPLETE Epithelial cell, cell culture PXD003709 Preferential phosphorylation on old histones during early mitosis in human cells Homo sapiens (Human) 2016-06-01 COMPLETE Blood cell, cell culture PXD002057 Proteomic analysis identifies novel pathways linking epithelial-to-mesenchymal transition with resistance to HER2-targeted therapy Homo sapiens (Human) 2016-02-22 COMPLETE cell culture PXD002436 Monitoring cellular phosphorylation signaling pathways into chromatin and down to the gene level Homo sapiens (Human) 2015-11-09 COMPLETE HeLa cell PXD000964 MS approach assessment and Mad1 phosphopeptide analysis Homo sapiens (Human) 2014-10-31 COMPLETE cell culture PXD000680 Stable isotope labeling of phosphoproteins for large-scale phosphorylation rate determination Homo sapiens (Human) 2014-04-15 COMPLETE HeLa cell,HEK-293 cell PXD000218 System-level analysis of cancer and stomal cell specific proteomes reveals extensive reprogramming of phosphorylation networks by tumor microenvironment Homo sapiens (Human),Mus musculus (Mouse) 2014-04-01 COMPLETE Epithelial cell, colon PXD000674 PeptideShaker Homo sapiens (Human) 2014-01-27 COMPLETE HeLa cell