Package | Description |
---|---|
com.compomics.util.db |
Database related classes.
|
com.compomics.util.experiment.identification |
Experiment classes related to identifications.
|
com.compomics.util.experiment.identification.protein_inference.proteintree |
Protein sequence database indexing classes.
|
Modifier and Type | Method and Description |
---|---|
ObjectsCache |
ObjectsDB.getObjectsCache()
Returns the cache used by this database.
|
Modifier and Type | Method and Description |
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void |
ObjectsDB.establishConnection(String aDbFolder,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Establishes connection to the database.
|
void |
ObjectsDB.setObjectCache(ObjectsCache objectCache)
Sets the object cache to be used by this database.
|
Constructor and Description |
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ObjectsDB(String folder,
String dbName,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Constructor.
|
Modifier and Type | Method and Description |
---|---|
void |
Identification.establishConnection(String dbFolder,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Establishes a connection to the database.
|
void |
IdentificationDB.restoreConnection(String dbFolder,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Restores the connection to the database.
|
void |
Identification.restoreConnection(String dbFolder,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Restores the connection to the database.
|
Constructor and Description |
---|
IdentificationDB(String folder,
String name,
boolean deleteOldDatabase,
ObjectsCache objectCache)
Constructor creating the database and the protein and protein parameters
tables.
|
Modifier and Type | Method and Description |
---|---|
ObjectsCache |
ProteinTreeComponentsFactory.getCache()
Returns the cache used to store the nodes.
|
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