com.compomics.util.experiment.biology.mutations

Class Mutation

java.lang.Object

com.compomics.util.experiment.biology.mutations.Mutation

public class Mutation
extends Object

This class represents a mutation of one amino acid to another from the 20-letter amino acid alphabet.

Author:

Thilo Muth

Constructor Summary

Constructors

Constructor and Description
Mutation(AminoAcid origin, AminoAcid target) Constructs a mutation from one amino acid (origin) to another (target).

Method Summary

Modifier and Type	Method and Description
boolean	equals(Mutation mutation) Overwritten equals method.
double	getMassShift() Returns the mass shift.
AminoAcid	getOrigin() Returns the origin amino acid.
int	getRoundedMassShift() Get rounded mass shift.
AminoAcid	getTarget() Returns the target amino acid.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Mutation

public Mutation(AminoAcid origin,
                AminoAcid target)

Constructs a mutation from one amino acid (origin) to another (target).

Parameters:

origin - the origin

target - the target

Method Detail

getMassShift

public double getMassShift()

Returns the mass shift.

Returns:

The mass shift.

getRoundedMassShift

public int getRoundedMassShift()

Get rounded mass shift.

Returns:

Rounded mass shift.

getOrigin

public AminoAcid getOrigin()

Returns the origin amino acid.

Returns:

The origin amino acid.

getTarget

public AminoAcid getTarget()

Returns the target amino acid.

Returns:

The target amino acid.

equals

public boolean equals(Mutation mutation)

Overwritten equals method.

Parameters:

mutation - The mutation to be compared.

Returns:

True if both mutations are the same.

toString

public String toString()

Overrides:

toString in class Object