See: Description
Class | Description |
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AminoAcid |
Class representing amino acids.
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AminoAcidPattern |
An amino acid pattern is a sequence of amino acids.
|
AminoAcidSequence |
This class represents a series of amino acids with associated modifications.
|
Atom |
This interface contains information about atoms.
|
AtomChain |
A chain of atoms.
|
AtomImpl |
Class for a specific atom.
|
ElementaryElement |
This class can be used to retrieve elementary elements like a neutron.
|
Enzyme |
This class models an enzyme.
|
EnzymeFactory |
This factory will provide the implemented enzymes.
|
GlyconFactory |
This factory will provide theoretic glycons.
|
Ion |
This class models an ion.
|
IonFactory |
This factory generates the expected ions from a peptide.
|
MassGap |
An undefined mass gap.
|
NeutralLoss |
This class represents a neutral loss.
|
Peptide |
This class models a peptide.
|
Protein |
This class models a protein.
|
PTM |
This class models a post-translational modification.
|
PTMFactory |
This factory will load PTM from an XML file and provide them on demand as
standard class.
|
Sample |
This class models a proteomic sample.
|
Enum | Description |
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Ion.IonType |
An enumerator of the supported ion types.
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