Uses of Class
com.compomics.util.experiment.identification.amino_acid_tags.matchers.TagMatcher

Packages that use TagMatcher

Package	Description
com.compomics.util.experiment.identification.matches	Experiment classes related to matches.
com.compomics.util.experiment.identification.protein_inference.proteintree	Protein sequence database indexing classes.

Uses of TagMatcher in com.compomics.util.experiment.identification.matches

Methods in com.compomics.util.experiment.identification.matches with parameters of type TagMatcher

Modifier and Type	Method and Description
SpectrumMatch	SpectrumMatch.getPeptidesFromTags(ProteinTree proteinTree, TagMatcher tagMatcher, SequenceMatchingPreferences sequenceMatchingPreferences, Double massTolerance, boolean scoreInAscendingOrder, boolean ascendingScore) Creates a peptide based spectrum match where peptide assumptions are deduced from tag assumptions.

Uses of TagMatcher in com.compomics.util.experiment.identification.protein_inference.proteintree

Methods in com.compomics.util.experiment.identification.protein_inference.proteintree with parameters of type TagMatcher

Modifier and Type	Method and Description
HashMap<Peptide,HashMap<String,ArrayList<Integer>>>	ProteinTree.getProteinMapping(Tag tag, TagMatcher tagMatcher, SequenceMatchingPreferences sequenceMatchingPreferences, Double massTolerance) Returns the protein mappings for the given peptide sequence.