Package | Description |
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com.compomics.util.experiment.identification.filtering |
Classes for the filtering of identification objects.
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com.compomics.util.gui.parameters.identification_parameters |
GUI classes for parameters, settings and preferences used for identification.
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com.compomics.util.preferences |
Utilities preferences classes.
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Modifier and Type | Method and Description |
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boolean |
PeptideAssumptionFilter.isSameAs(PeptideAssumptionFilter anotherFilter)
Indicates whether this filter is the same as another one.
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Modifier and Type | Method and Description |
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PeptideAssumptionFilter |
MatchesImportFiltersDialog.getFilter()
Returns the id filter as set by the user.
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Constructor and Description |
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MatchesImportFiltersDialog(Dialog owner,
Frame parentFrame,
PeptideAssumptionFilter idFilter,
boolean editable)
Creates a new ImportSettingsDialog with a dialog as owner.
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MatchesImportFiltersDialog(Frame parentFrame,
PeptideAssumptionFilter idFilter,
boolean editable)
Creates a new ImportSettingsDialog with a frame as owner.
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Modifier and Type | Method and Description |
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PeptideAssumptionFilter |
IdentificationParameters.getPeptideAssumptionFilter()
Returns the filter used when importing PSMs.
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Modifier and Type | Method and Description |
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void |
IdentificationParameters.setIdFilter(PeptideAssumptionFilter peptideAssumptionFilter)
Sets the filter used when importing PSMs.
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Constructor and Description |
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IdentificationParameters(String name,
String description,
SearchParameters searchParameters,
AnnotationSettings annotationSettings,
SequenceMatchingPreferences sequenceMatchingPreferences,
GenePreferences genePreferences,
PsmScoringPreferences psmScoringPreferences,
PeptideAssumptionFilter peptideAssumptionFilter,
PTMScoringPreferences ptmScoringPreferences,
ProteinInferencePreferences proteinInferencePreferences,
IdMatchValidationPreferences idValidationPreferences,
FractionSettings fractionSettings)
Constructor.
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