public class NovorParameters extends Object implements IdentificationAlgorithmParameter
Constructor and Description |
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NovorParameters()
Constructor.
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Modifier and Type | Method and Description |
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boolean |
equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
Indicates whether another identificationAlgorithmParameter has the same
parameters.
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Advocate |
getAlgorithm()
Returns the identification algorithm.
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String |
getFragmentationMethod()
Returns the fragmentation method.
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String |
getMassAnalyzer()
Returns the mass analyzer.
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HashMap<String,String> |
getNovorPtmMap()
Returns the Novor to utilities PTM map.
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String |
getUtilitiesPtmName(String novorPtmShortName)
Returns the utilities PTM name corresponding to the given Novor PTM
short name.
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void |
setFragmentationMethod(String fragmentationMethod)
Set the fragmentation method.
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void |
setMassAnalyzer(String massAnalyzer)
Set the mass analyzer.
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void |
setNovorPtmMap(HashMap<String,String> novorPtmMap)
Set the Novor to utilities PTM map.
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String |
toString(boolean html)
Returns the parameters as a string.
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public Advocate getAlgorithm()
IdentificationAlgorithmParameter
getAlgorithm
in interface IdentificationAlgorithmParameter
public boolean equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
IdentificationAlgorithmParameter
equals
in interface IdentificationAlgorithmParameter
identificationAlgorithmParameter
- the other
identificationAlgorithmParameterpublic String toString(boolean html)
IdentificationAlgorithmParameter
toString
in interface IdentificationAlgorithmParameter
html
- use HTML formattingpublic String getFragmentationMethod()
public void setFragmentationMethod(String fragmentationMethod)
fragmentationMethod
- the fragmentation method to setpublic String getMassAnalyzer()
public void setMassAnalyzer(String massAnalyzer)
massAnalyzer
- the mass analyzer to setpublic HashMap<String,String> getNovorPtmMap()
public void setNovorPtmMap(HashMap<String,String> novorPtmMap)
novorPtmMap
- the novorPtmMap to setCopyright © 2016. All rights reserved.