Package | Description |
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com.compomics.util.experiment.identification |
Experiment classes related to identifications.
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com.compomics.util.experiment.identification.matches |
Experiment classes related to matches.
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com.compomics.util.experiment.identification.matches_iterators |
Identification match iterators.
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Modifier and Type | Method and Description |
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ProteinMatch |
Identification.getProteinMatch(String proteinKey)
Returns a protein match.
|
ProteinMatch |
IdentificationDB.getProteinMatch(String key,
boolean useDB)
Returns the desired protein match.
|
ProteinMatch |
Identification.getProteinMatch(String proteinKey,
boolean useDB)
Returns a protein match.
|
Modifier and Type | Method and Description |
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void |
IdentificationDB.addProteinMatch(ProteinMatch proteinMatch)
Adds a protein match to the database.
|
void |
IdentificationDB.updateProteinMatch(ProteinMatch proteinMatch)
Updates a protein match.
|
void |
Identification.updateProteinMatch(ProteinMatch proteinMatch)
Updates a protein match in the database.
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Modifier and Type | Method and Description |
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boolean |
ProteinMatch.contains(ProteinMatch proteinMatch)
Returns a boolean indicating whether the protein match contains another
set of theoretic proteins.
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Modifier and Type | Method and Description |
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ProteinMatch |
ProteinMatchesIterator.next()
Returns the next match and updates the buffer.
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