public class SequenceFactory.ProteinIterator extends Object
Constructor and Description |
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ProteinIterator(File file,
boolean targetOnly)
Constructor.
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Modifier and Type | Method and Description |
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void |
close()
Closes the connection to the file.
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Protein |
getNextProtein()
Returns the next protein.
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boolean |
hasNext()
Returns true if there is another protein.
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public ProteinIterator(File file, boolean targetOnly) throws FileNotFoundException
targetOnly
- if true only target proteins will be iteratedfile
- the FASTA file.FileNotFoundException
- if a FileNotFoundException occurspublic boolean hasNext() throws IOException
IOException
- if an IOException occurspublic Protein getNextProtein()
public void close() throws IOException
IOException
- if an IOException occursCopyright © 2016. All rights reserved.