Package | Description |
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com.compomics.util.experiment.identification.protein_sequences |
Protein sequence handling related classes.
|
com.compomics.util.protein_sequences_manager |
Classes used for the management of FASTA files.
|
Modifier and Type | Method and Description |
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FastaIndex |
SequenceFactory.getCurrentFastaIndex()
Returns the FASTA index of the currently loaded file.
|
static FastaIndex |
SequenceFactory.getFastaIndex(File fastaFile,
boolean overwrite,
WaitingHandler waitingHandler)
Returns the file index of the given FASTA file.
|
Modifier and Type | Method and Description |
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static void |
SequenceFactory.writeIndex(FastaIndex fastaIndex,
File directory)
Serializes the FASTA file index in a given directory.
|
Modifier and Type | Method and Description |
---|---|
FastaIndex |
ProteinSequencesManager.getFastaIndex(String databaseName,
String version)
Returns the FASTA index of the given database name and version.
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