Package | Description |
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com.compomics.util.experiment.identification.psm_scoring |
Main PSM scoring class.
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Modifier and Type | Method and Description |
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static PsmScores |
PsmScores.getScore(int scoreIndex)
Returns the PSM score of the given index.
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static PsmScores |
PsmScores.valueOf(String name)
Returns the enum constant of this type with the specified name.
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static PsmScores[] |
PsmScores.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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Modifier and Type | Method and Description |
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static double |
PsmScores.getScore(Peptide peptide,
Integer peptideCharge,
MSnSpectrum spectrum,
ShotgunProtocol shotgunProtocol,
IdentificationParameters identificationParameters,
SpecificAnnotationSettings specificAnnotationPreferences,
PsmScores psmScore)
Scores the match between the given peptide and spectrum using the given
score.
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