Package com.compomics.util.experiment.identification.psm_scoring.psm_scores

Main PTM scoring classes.

See: Description

Class Summary

Class	Description
AAIntensityRankScore	The intensity rank sub-score as adapted from the DirecTag paper where the minimal value per amino-scid is retained (http://www.ncbi.nlm.nih.gov/pubmed/18630943).
AAMS2MzFidelityScore	The m/z fidelity sub-score as adapted from the DirecTag paper where the minimal value per amino-scid is retained (http://www.ncbi.nlm.nih.gov/pubmed/18630943).
ComplementarityScore	The intensity sub-score as adapted from the DirecTag manuscript (http://www.ncbi.nlm.nih.gov/pubmed/18630943).
IntensityRankScore	The intensity rank sub-score as adapted from the DirecTag manuscript (http://www.ncbi.nlm.nih.gov/pubmed/18630943).
MS2MzFidelityScore	The m/z fidelity sub-score as adapted from the DirecTag manuscript (http://www.ncbi.nlm.nih.gov/pubmed/18630943).
PrecursorAccuracy	The precursor accuracy as a score.

Package com.compomics.util.experiment.identification.psm_scoring.psm_scores Description

Main PTM scoring classes.