Package | Description |
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com.compomics.util.experiment.identification.ptm |
Additional PSM scoring classes.
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com.compomics.util.preferences |
Utilities preferences classes.
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Modifier and Type | Method and Description |
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static PtmScore |
PtmScore.getScore(int id)
Returns the PTM score indexed by the given id.
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static PtmScore |
PtmScore.getScore(String name)
Returns the PTM score of the given name.
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static PtmScore[] |
PtmScore.getScoresAsList()
Returns a list containing the names of the implemented scores.
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static PtmScore |
PtmScore.valueOf(String name)
Returns the enum constant of this type with the specified name.
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static PtmScore[] |
PtmScore.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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Modifier and Type | Method and Description |
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static ArrayList<PtmScore> |
PtmScore.getImplementedPtmScores()
Returns a list of the implemented scores.
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Modifier and Type | Method and Description |
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PtmScore |
PTMScoringPreferences.getSelectedProbabilisticScore()
Returns the selected probabilistic score.
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Modifier and Type | Method and Description |
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void |
PTMScoringPreferences.setSelectedProbabilisticScore(PtmScore selectedProbabilisticScore)
Sets the selected probabilistic score.
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