public class MDScore extends Object
Constructor and Description |
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MDScore() |
Modifier and Type | Method and Description |
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static Double |
getMDScore(ArrayList<SpectrumIdentificationAssumption> mascotAssumptions,
Peptide peptideCandidate,
ArrayList<String> ptms,
SequenceMatchingPreferences sequenceMatchingPreferences,
Integer rounding)
Returns the MD score for the given peptide in a spectrum match.
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public static Double getMDScore(ArrayList<SpectrumIdentificationAssumption> mascotAssumptions, Peptide peptideCandidate, ArrayList<String> ptms, SequenceMatchingPreferences sequenceMatchingPreferences, Integer rounding)
mascotAssumptions
- the assumptions by MascotpeptideCandidate
- the peptide of interestptms
- the names of the PTMs to scoresequenceMatchingPreferences
- the sequence matching preferencesrounding
- decimal to which the score should be rounded, ignored if
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