Uses of Class
com.compomics.util.experiment.io.massspectrometry.MgfIndex

Packages that use MgfIndex

Package	Description
com.compomics.util.experiment.io.massspectrometry	Reading and indexing of mgf files.
com.compomics.util.experiment.massspectrometry	Experiment classes related to spectra.

Uses of MgfIndex in com.compomics.util.experiment.io.massspectrometry

Methods in com.compomics.util.experiment.io.massspectrometry that return MgfIndex

Modifier and Type	Method and Description
static MgfIndex	MgfReader.getIndexMap(File mgfFile) Returns the index of all spectra in the given mgf file.
static MgfIndex	MgfReader.getIndexMap(File mgfFile, WaitingHandler waitingHandler) Returns the index of all spectra in the given MGF file.

Methods in com.compomics.util.experiment.io.massspectrometry that return types with arguments of type MgfIndex

Modifier and Type	Method and Description
ArrayList<MgfIndex>	MgfReader.splitFile(File mgfFile, int nSpectra, WaitingHandler waitingHandler) Splits an mgf file into smaller ones and returns the indexes of the generated files.

Uses of MgfIndex in com.compomics.util.experiment.massspectrometry

Methods in com.compomics.util.experiment.massspectrometry that return MgfIndex

Modifier and Type	Method and Description
MgfIndex	SpectrumFactory.getIndex(File mgfIndex) Deserializes the index of an mgf file.

Methods in com.compomics.util.experiment.massspectrometry with parameters of type MgfIndex

Modifier and Type	Method and Description
void	SpectrumFactory.writeIndex(MgfIndex mgfIndex, File directory) Writes the given mgf file index in the given directory.