Package | Description |
---|---|
com.compomics.util.experiment |
Gene factory classes.
|
com.compomics.util.experiment.identification.identification_parameters.tool_specific |
Parameters settings for the search algorithms.
|
com.compomics.util.experiment.io.massspectrometry.export |
Experiment classes related to exporting mass spectrometry files.
|
com.compomics.util.experiment.massspectrometry |
Experiment classes related to spectra.
|
Modifier and Type | Method and Description |
---|---|
FragmentationMethod |
ShotgunProtocol.getFragmentationMethod()
Returns the fragmentation method.
|
Modifier and Type | Method and Description |
---|---|
void |
ShotgunProtocol.setFragmentationMethod(FragmentationMethod fragmentationMethod)
Sets the fragmentation method.
|
Modifier and Type | Method and Description |
---|---|
FragmentationMethod |
AndromedaParameters.getFragmentationMethod()
Returns the fragmentation method used.
|
Modifier and Type | Method and Description |
---|---|
void |
AndromedaParameters.setFragmentationMethod(FragmentationMethod fragmentationMethod)
Sets the fragmentation method used.
|
Modifier and Type | Method and Description |
---|---|
static void |
AplExporter.mgfToApl(File mgfFile,
File destinationFile,
FragmentationMethod fragmentationMethod,
int minCharge,
int maxCharge)
Writes the content of the given file name into the destination file in
the APL format.
|
static void |
AplExporter.writeSpectrum(BufferedWriter bw,
MSnSpectrum spectrum,
FragmentationMethod fragmentationMethod,
int charge)
Writes the given spectrum in ms2 format.
|
Modifier and Type | Method and Description |
---|---|
static FragmentationMethod |
FragmentationMethod.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static FragmentationMethod[] |
FragmentationMethod.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
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