Package | Description |
---|---|
com.compomics.util.experiment.identification.spectrum_annotation |
Classes used for ms2 spectrum annotation.
|
com.compomics.util.experiment.massspectrometry |
Experiment classes related to spectra.
|
Modifier and Type | Method and Description |
---|---|
static ArrayList<IonMatch> |
SpectrumAnnotator.matchReporterIon(Ion theoreticIon,
int charge,
Spectrum spectrum,
double massTolerance)
Convenience method to match a reporter ion in a spectrum.
|
Modifier and Type | Class and Description |
---|---|
class |
MS1Spectrum
This class models an MS1 spectrum.
|
class |
MSnSpectrum
This class models an MSn spectrum.
|
Modifier and Type | Method and Description |
---|---|
Spectrum |
SpectrumFactory.getSpectrum(String spectrumKey)
Returns the desired spectrum.
|
Spectrum |
SpectrumFactory.getSpectrum(String spectrumFile,
String spectrumTitle)
Returns the desired spectrum.
|
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