public class NormalizationFactors extends Object implements Serializable
Constructor and Description |
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NormalizationFactors()
Constructor.
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Modifier and Type | Method and Description |
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void |
addPeptideNormalisationFactor(String sampleName,
double normalisationFactor)
Adds a peptide normalization factor.
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void |
addProteinNormalisationFactor(String sampleName,
double normalisationFactor)
Adds a protein normalization factor.
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void |
addPsmNormalisationFactor(String sampleName,
double normalisationFactor)
Adds a PSM normalization factor.
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void |
addSharedProteinNormalisationFactor(String sampleName,
double normalisationFactor)
Adds a unique protein normalization factor.
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void |
addUniqueProteinNormalisationFactor(String sampleName,
double normalisationFactor)
Adds a unique protein normalization factor.
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double |
getPeptideNormalisationFactor(String sampleName)
Returns the peptide normalization factor for the given sample, 1.0 if not
set.
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double |
getProteinNormalisationFactor(String sampleName)
Returns the protein normalization factor for the given sample, 1.0 if not
set.
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double |
getPsmNormalisationFactor(String sampleName)
Returns the PSM normalization factor for the given sample, 1.0 if not
set.
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double |
getSharedProteinNormalisationFactor(String sampleName)
Returns the shared protein normalization factor for the given sample, 1.0
if not set.
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double |
getUniqueProteinNormalisationFactor(String sampleName)
Returns the unique protein normalization factor for the given sample, 1.0
if not set.
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boolean |
hasNormalizationFactors()
Indicates whether normalization factors are set.
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boolean |
hasPeptideNormalisationFactors()
Indicates whether the peptide normalization factors are set.
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boolean |
hasProteinNormalisationFactors()
Indicates whether the protein normalization factors are set.
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boolean |
hasPsmNormalisationFactors()
Indicates whether the PSM normalization factors are set.
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void |
resetPeptideNormalisationFactors()
Resets the peptide normalization factors.
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void |
resetProteinNormalisationFactors()
Resets the protein normalization factors.
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void |
resetPsmNormalisationFactors()
Resets the PSM normalization factors.
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public boolean hasNormalizationFactors()
public boolean hasProteinNormalisationFactors()
public boolean hasPeptideNormalisationFactors()
public boolean hasPsmNormalisationFactors()
public void resetProteinNormalisationFactors()
public void resetPeptideNormalisationFactors()
public void resetPsmNormalisationFactors()
public void addProteinNormalisationFactor(String sampleName, double normalisationFactor)
sampleName
- the index of the samplenormalisationFactor
- the normalization factorpublic void addUniqueProteinNormalisationFactor(String sampleName, double normalisationFactor)
sampleName
- the index of the samplenormalisationFactor
- the normalization factorpublic void addSharedProteinNormalisationFactor(String sampleName, double normalisationFactor)
sampleName
- the index of the samplenormalisationFactor
- the normalization factorpublic void addPeptideNormalisationFactor(String sampleName, double normalisationFactor)
sampleName
- the index of the samplenormalisationFactor
- the normalization factorpublic void addPsmNormalisationFactor(String sampleName, double normalisationFactor)
sampleName
- the index of the samplenormalisationFactor
- the normalization factorpublic double getProteinNormalisationFactor(String sampleName)
sampleName
- the index of the samplepublic double getUniqueProteinNormalisationFactor(String sampleName)
sampleName
- the index of the samplepublic double getSharedProteinNormalisationFactor(String sampleName)
sampleName
- the index of the samplepublic double getPeptideNormalisationFactor(String sampleName)
sampleName
- the index of the samplepublic double getPsmNormalisationFactor(String sampleName)
sampleName
- the index of the sampleCopyright © 2016. All rights reserved.