com.compomics.util.experiment.quantification.reporterion

Class Reagent

java.lang.Object

com.compomics.util.experiment.quantification.reporterion.Reagent

All Implemented Interfaces:

Serializable

public class Reagent
extends Object
implements Serializable

A reporter ion labeling reagent.

Author:

Marc Vaudel

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
Reagent()

Method Summary

Modifier and Type	Method and Description
double	getMinus1() Returns the isotopic correction factor at -1 Da.
double	getMinus2() Returns the isotopic correction factor at -2 Da.
String	getName() Returns the name of the reagent.
double	getPlus1() Returns the isotopic correction factor at +1 Da.
double	getPlus2() Returns the isotopic correction factor at +2 Da.
double	getRef() Returns the value used as reference for the correction factors.
ReporterIon	getReporterIon() Returns the reporter ion to look for in the spectrum.
void	setMinus1(double minus1) Sets the isotopic correction factor at -1 Da.
void	setMinus2(double minus2) Sets the isotopic correction factor at -2 Da.
void	setName(String name) Sets the name of the reagent.
void	setPlus1(double plus1) Sets the isotopic correction factor at +1 Da.
void	setPlus2(double plus2) Sets the isotopic correction factor at +2 Da.
void	setRef(double ref) Sets the value used as reference for the correction factors.
void	setReporterIon(ReporterIon reporterIon) Sets the reporter ion to look for in the spectrum.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Reagent

public Reagent()

Method Detail

getName

public String getName()

Returns the name of the reagent.

Returns:

the name of the reagent

setName

public void setName(String name)

Sets the name of the reagent.

Parameters:

name - the name of the reagent

getReporterIon

public ReporterIon getReporterIon()

Returns the reporter ion to look for in the spectrum.

Returns:

the reporter ion to look for in the spectrum

setReporterIon

public void setReporterIon(ReporterIon reporterIon)

Sets the reporter ion to look for in the spectrum.

Parameters:

reporterIon - the reporter ion to look for in the spectrum

getMinus2

public double getMinus2()

Returns the isotopic correction factor at -2 Da.

Returns:

the isotopic correction factor at -2 Da

setMinus2

public void setMinus2(double minus2)

Sets the isotopic correction factor at -2 Da.

Parameters:

minus2 - the isotopic correction factor at -2 Da

getMinus1

public double getMinus1()

Returns the isotopic correction factor at -1 Da.

Returns:

the isotopic correction factor at -1 Da

setMinus1

public void setMinus1(double minus1)

Sets the isotopic correction factor at -1 Da.

Parameters:

minus1 - the isotopic correction factor at -1 Da

getRef

public double getRef()

Returns the value used as reference for the correction factors.

Returns:

the value used as reference for the correction factors

setRef

public void setRef(double ref)

Sets the value used as reference for the correction factors.

Parameters:

ref - the value used as reference for the correction factors

getPlus1

public double getPlus1()

Returns the isotopic correction factor at +1 Da.

Returns:

the isotopic correction factor at +1 Da

setPlus1

public void setPlus1(double plus1)

Sets the isotopic correction factor at +1 Da.

Parameters:

plus1 - the isotopic correction factor at +1 Da

getPlus2

public double getPlus2()

Returns the isotopic correction factor at +2 Da.

Returns:

the isotopic correction factor at +2 Da

setPlus2

public void setPlus2(double plus2)

Sets the isotopic correction factor at +2 Da.

Parameters:

plus2 - the isotopic correction factor at +2 Da