Package | Description |
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com.compomics.util.gui.parameters.identification_parameters |
GUI classes for parameters, settings and preferences used for identification.
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com.compomics.util.preferences |
Utilities preferences classes.
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Modifier and Type | Method and Description |
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IdMatchValidationPreferences |
ValidationSettingsDialog.getIdMatchValidationPreferences()
Returns the validation settings as set by the user.
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Constructor and Description |
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ValidationSettingsDialog(Dialog owner,
Frame parentFrame,
IdMatchValidationPreferences idMatchValidationPreferences,
boolean editable)
Creates a new ValidationSettingsDialog with a dialog as owner.
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ValidationSettingsDialog(Frame parentFrame,
IdMatchValidationPreferences idMatchValidationPreferences,
boolean editable)
Creates a new ValidationSettingsDialog with a frame as owner.
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Modifier and Type | Method and Description |
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IdMatchValidationPreferences |
IdentificationParameters.getIdValidationPreferences()
Returns the identification matches validation preferences.
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Modifier and Type | Method and Description |
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boolean |
IdMatchValidationPreferences.equals(IdMatchValidationPreferences otherIdMatchValidationPreferences)
Returns true if the objects have identical settings.
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void |
IdentificationParameters.setIdValidationPreferences(IdMatchValidationPreferences idValidationPreferences)
Sets the identification matches validation preferences.
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Constructor and Description |
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IdentificationParameters(String name,
String description,
SearchParameters searchParameters,
AnnotationSettings annotationSettings,
SequenceMatchingPreferences sequenceMatchingPreferences,
GenePreferences genePreferences,
PsmScoringPreferences psmScoringPreferences,
PeptideAssumptionFilter peptideAssumptionFilter,
PTMScoringPreferences ptmScoringPreferences,
ProteinInferencePreferences proteinInferencePreferences,
IdMatchValidationPreferences idValidationPreferences,
FractionSettings fractionSettings)
Constructor.
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IdMatchValidationPreferences(IdMatchValidationPreferences idMatchValidationPreferences)
Creates a new IdMatchValidationPreferences based on the values of the
given IdMatchValidationPreferences.
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