com.compomics.util.pride.prideobjects.webservice

Enum PrideQuery

java.lang.Object

java.lang.Enum<PrideQuery>

com.compomics.util.pride.prideobjects.webservice.PrideQuery

All Implemented Interfaces:

Serializable, Comparable<PrideQuery>

public enum PrideQuery
extends Enum<PrideQuery>

An enum that constructs the template queries for the PRIDE webservice.

Author:

Kenneth Verheggen

Enum Constant Summary

Enum Constants

Enum Constant and Description
GET_ALL_PEPTIDE_IDENTIFICATIONS_BY_ASSAY
GET_ALL_PEPTIDE_IDENTIFICATIONS_BY_ASSAY_AND_SEQUENCE
GET_ALL_PEPTIDE_IDENTIFICATIONS_BY_PROJECT
GET_ALL_PEPTIDE_IDENTIFICATIONS_BY_PROJECT_AND_SEQUENCE
GET_ALL_PROTEIN_IDENTIFICATIONS_BY_ASSAY
GET_ALL_PROTEIN_IDENTIFICATIONS_BY_PROJECT
GET_ASSAY_BY_ACCESSION
GET_ASSAYS_BY_PROJECT
GET_FILES_BY_ASAY
GET_FILES_BY_PROJECT
GET_PROJECT_BY_ACCESSION
GET_PROJECTS_BY_CRITERIA
GET_PROTEIN_IDENTIFICATION_BY_PROJECT

Method Summary

Modifier and Type	Method and Description
String	getQueryTemplate(boolean count) Returns the actual query template.
static PrideQuery	valueOf(String name) Returns the enum constant of this type with the specified name.
static PrideQuery[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

GET_PROJECT_BY_ACCESSION

public static final PrideQuery GET_PROJECT_BY_ACCESSION

GET_PROJECTS_BY_CRITERIA

public static final PrideQuery GET_PROJECTS_BY_CRITERIA

GET_ASSAY_BY_ACCESSION

public static final PrideQuery GET_ASSAY_BY_ACCESSION

GET_ASSAYS_BY_PROJECT

public static final PrideQuery GET_ASSAYS_BY_PROJECT

GET_FILES_BY_PROJECT

public static final PrideQuery GET_FILES_BY_PROJECT

GET_FILES_BY_ASAY

public static final PrideQuery GET_FILES_BY_ASAY

GET_ALL_PROTEIN_IDENTIFICATIONS_BY_PROJECT

public static final PrideQuery GET_ALL_PROTEIN_IDENTIFICATIONS_BY_PROJECT

GET_PROTEIN_IDENTIFICATION_BY_PROJECT

public static final PrideQuery GET_PROTEIN_IDENTIFICATION_BY_PROJECT

GET_ALL_PROTEIN_IDENTIFICATIONS_BY_ASSAY

public static final PrideQuery GET_ALL_PROTEIN_IDENTIFICATIONS_BY_ASSAY

GET_ALL_PEPTIDE_IDENTIFICATIONS_BY_PROJECT

public static final PrideQuery GET_ALL_PEPTIDE_IDENTIFICATIONS_BY_PROJECT

GET_ALL_PEPTIDE_IDENTIFICATIONS_BY_PROJECT_AND_SEQUENCE

public static final PrideQuery GET_ALL_PEPTIDE_IDENTIFICATIONS_BY_PROJECT_AND_SEQUENCE

GET_ALL_PEPTIDE_IDENTIFICATIONS_BY_ASSAY

public static final PrideQuery GET_ALL_PEPTIDE_IDENTIFICATIONS_BY_ASSAY

GET_ALL_PEPTIDE_IDENTIFICATIONS_BY_ASSAY_AND_SEQUENCE

public static final PrideQuery GET_ALL_PEPTIDE_IDENTIFICATIONS_BY_ASSAY_AND_SEQUENCE

Method Detail

values

public static PrideQuery[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (PrideQuery c : PrideQuery.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static PrideQuery valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getQueryTemplate

public String getQueryTemplate(boolean count)

Returns the actual query template.

Parameters:

count - a boolean indicating if the query is to be used for counting json objects (faster than iterating a list of objects)

Returns:

the actual query template for a count or list